# Desmond simulation

**URL:** <https://forum.knime.com/t/desmond-simulation/22001>\
**Category:** KCH Workflows\
**Created:** [March 24, 2020, 8:53pm UTC](https://forum.knime.com/t/desmond-simulation/22001 "2020-03-24T20:53:26Z")\
**Posts on this page:** 1\
**Page:** 1

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**Author:** ![Hub](https://forum-cdn.knime.com/user_avatar/forum.knime.com/hub/32/5438_2.png) [@Hub](https://forum.knime.com/u/Hub)\
**Post date:** [March 24, 2020, 8:53pm UTC](https://forum.knime.com/t/desmond-simulation/22001/1 "2020-03-24T20:53:26Z")

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Prepare a system and run a Desmond MD simulation. Individual frames are then extracted and analyzed in terms of hydrogen bond network and atom distance. [Requires: Desmond] [Keywords: Moleclar dynamics simulation, trajectory, snapshots, jobcontrol, distance, hydrogen bond, atom selection]

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This is a companion discussion topic for the original entry at [https://kni.me/w/BhbSIOt\_dab8fek7](https://kni.me/w/BhbSIOt_dab8fek7)