ERROR OMSSAAdapter

 

Dear all,

When i am running OMSSAAdapter for my mzML data, i am getting following error, how can i slove this problem.

ERROR OMSSAAdapter         2:8        Failing process stdout: [Progress of 'loading spectra list':, ,   1.99 %               ,   13.58 %               ,   21.09 %               ,   28.63 %               ,   36.07 %               ,   42.98 %               ,   50.18 %               ,   59.79 %               ,   77.03 %               ,   90.07 %               , -- done [took 6.69 s (CPU), 10.07 s (Wall)] -- , Progress of 'loading chromatogram list':, , -- done [took 0.00 s (CPU), 0.00 s (Wall)] -- , Chunk size is <=0; disabling chunking of input! If OMSSA crashes due to memory allocation errors, try setting 'chunk_size' to a value below 30000 (e.g., 10000 is usually ok)., Error: Unexpected internal error (The value '16479' was used but is not valid! Spectrum to be written as MGF has more than 10.000 peaks, which is the maximum upper limit. Only centroided data is allowed. This is most likely raw data.)]

ERROR OMSSAAdapter         2:8        Failing process stderr: []

ERROR OMSSAAdapter         2:8        Execute failed: Failed to execute node OMSSAAdapter

ERROR OMSSAAdapter         2:8        Failing process stdout: [Progress of 'loading spectra list':, ,   0.29 %               ,   15.47 %               ,   27.38 %               ,   38.66 %               ,   49.86 %               ,   64.94 %               ,   86.95 %               , -- done [took 6.59 s (CPU), 6.79 s (Wall)] -- , Progress of 'loading chromatogram list':, , -- done [took 0.00 s (CPU), 0.00 s (Wall)] -- , Chunk size is <=0; disabling chunking of input! If OMSSA crashes due to memory allocation errors, try setting 'chunk_size' to a value below 30000 (e.g., 10000 is usually ok)., Error: Unexpected internal error (The value '16479' was used but is not valid! Spectrum to be written as MGF has more than 10.000 peaks, which is the maximum upper limit. Only centroided data is allowed. This is most likely raw data.)]

ERROR OMSSAAdapter         2:8        Failing process stderr: []

ERROR OMSSAAdapter         2:8        Execute failed: Failed to execute node OMSSAAdapter

ERROR OMSSAAdapter         2:8        Failing process stdout: [Progress of 'loading spectra list':, ,   3.94 %               ,   17.91 %               ,   29.86 %               ,   41.28 %               ,   52.47 %               ,   68.67 %               ,   89.98 %               , -- done [took 6.61 s (CPU), 6.81 s (Wall)] -- , Progress of 'loading chromatogram list':, , -- done [took 0.00 s (CPU), 0.00 s (Wall)] -- , Error: Unexpected internal error (The value '16479' was used but is not valid! Spectrum to be written as MGF has more than 10.000 peaks, which is the maximum upper limit. Only centroided data is allowed. This is most likely raw data.)]

ERROR OMSSAAdapter         2:8        Failing process stderr: []

ERROR OMSSAAdapter         2:8        Execute failed: Failed to execute node OMSSAAdapter

ERROR OMSSAAdapter         2:8        Failing process stdout: [Progress of 'loading spectra list':, ,   15.02 %               ,   26.85 %               ,   38.44 %               ,   49.49 %               ,   64.00 %               ,   85.80 %               , -- done [took 6.64 s (CPU), 6.84 s (Wall)] -- , Progress of 'loading chromatogram list':, , -- done [took 0.00 s (CPU), 0.00 s (Wall)] -- , Error: Unexpected internal error (The value '16479' was used but is not valid! Spectrum to be written as MGF has more than 10.000 peaks, which is the maximum upper limit. Only centroided data is allowed. This is most likely raw data.)]

ERROR OMSSAAdapter         2:8        Failing process stderr: []

ERROR OMSSAAdapter         2:8        Execute failed: Failed to execute node OMSSAAdapter

ERROR OMSSAAdapter         2:8        Failing process stdout: [Progress of 'loading spectra list':, ,   4.78 %               ,   18.52 %               ,   30.62 %               ,   42.09 %               ,   54.00 %               ,   72.71 %               ,   92.41 %               , -- done [took 6.51 s (CPU), 6.70 s (Wall)] -- , Progress of 'loading chromatogram list':, , -- done [took 0.00 s (CPU), 0.00 s (Wall)] -- , Error: Unexpected internal error (The value '16479' was used but is not valid! Spectrum to be written as MGF has more than 10.000 peaks, which is the maximum upper limit. Only centroided data is allowed. This is most likely raw data.)]

ERROR OMSSAAdapter         2:8        Failing process stderr: []

ERROR OMSSAAdapter         2:8        Execute failed: Failed to execute node OMSSAAdapter

Duplicate of https://tech.knime.org/forum/openms/error-omssaadapter