ERROR SDF reader

KNIME Analytics Platform
1

The SDF reader no longer reads the structure portion of the file (all meta data in the sdf is read) and gives the error:
ERROR SDF Reader 5:1513 Configure failed (UnsatisfiedLinkError): no silib in java.library.path: /Users/mattperry/Library/Java/Extensions:/Library/Java/Extensions:/Network/Library/Java/Extensions:/System/Library/Java/Extensions:/usr/lib/java:.

I am currently running Knime 4.7.7 and everything is up to date. I have tried to delete and add the sdf reader, uninstalled knime and reinstalled, but nothing has worked so far.

Any help would be appreciated.

2

Hi @MP_88707913 and welcome to the forum.

I tried reproducing the issue just now with a sample SDF and was not successful - but then again, I am not a chemist so I am probably using something too simple.

Can you upload a sample SDF and/or workflow that reliably reproduces the problem?

3

Can you post the complete stack trace from the log file? The SDF Reader doesn’t use any native libraries therefore I’m wondering where this error comes from.

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