I have a workflow where I use a fileReader (SAMReader) and assign the file name to a variable in the Flow Variables tab of the configuration. This variable is then used to construct an output file name. I then try to execute the workflow from the command line (BATCH mode) and assign a new file name.
Now the problem: the Flow variable is not updated but rather the old value is used.
Is this intended behaviour or am I am doing something wrong.?
i would expect that the flow variable will be updated when a new file name is chosen...
Thanks for the clarification.