Hydrogen Remover also removes stereo

Hi, I wanted to use Indigo in Knime to remove explicit hydrogens from my molecules as they all over the structures.


However, when the hydrogen has a stereo bond and the H is removed, it also takes with it the stereo, rather than moving the stereo onto an adjacent bond, as Pipeline Pilot does. The stereo is just wiped.


Is there any way to remove the hydrogens but retain the stereo at the chiral centre?





This topic was automatically closed 90 days after the last reply. New replies are no longer allowed.