Image format Ilastik output

KNIME Extensions
1

Hello,

 

I realized a program for pixel classification on Ilastik and then I added to knime. The node I created only work with an output image in Hdf5 but I can't visualize it after. The viewer just print a gray screen.

 

Do you know how to obtain the same results as in Ilastik working alone?

Thank you,

 

Julie

2

Hi Julie,

grey might be correct. can you use the image normalizer after the ilastik node and check the output?

Best,

Christian

3

Hello,

 

I can't use normalizer because it exectutes but in the settings there isn't any datas recognized

4

the "Image Normalizer" (not the "Normalizer")? Also, can you right-click and go on "Image Viewer", click on an image and see if the result looks better there?

 

best,


Christian

5

The (right-click) image viewer of the Ilastik Pixel Classification node is not working, see https://github.com/knime-ip/knip-ilastik/issues/16.

You'll have to add an Image Viewer node downstream of the ilastik node in order to display its results.

Cheers
Jan

 

6

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