WARN ImageJ Macro 4:2231 ImageJ Macro Error: Unrecognized command: “Colour Deconvolution”
WARN ImageJ Macro 4:2231 Problem occured in rowTMA 101 B7H4 IHC-Scene-06-ScanRegion5.czi_1 : The specified macro has thrown an error while execution. Make sure that the used plugins are available in the selected IJ1 plugin folder! See KNIME Log for details! Missing cell has been inserted
Is it because colour deconvolution can’t run headless? Or am i doing something wrong? Is there a way around it? Can it be added as an imageJ2 pluggin?
I came across this post. We are working on a colour deconvolution plugin for IJ2.
We have now a first beta version.
I don’t know if you are still looking for a solution but maybe you can have a look at our plugin?