KNIME3.31 cannot be lanched

KNIME3.3.1(Linux CentOS 6.4) cannot be lanched and I found following two error message.

I could not find hs_err_* file.

Please tell me the solution.

 

Error message 1

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java.lang.NoSuchMethodException: org.knime.chem.types.SdfCell.<init>(java.lang.String)
    at java.lang.Class.getConstructor0(Class.java:3082)
    at java.lang.Class.getConstructor(Class.java:1825)
    at com.schrodinger.knime.util.MAEFileUtils.<clinit>(MAEFileUtils.java:5189)
    at com.schrodinger.knime.util.PythonService.init(PythonService.java:49)
    at com.schrodinger.knime.util.PythonService.start(PythonService.java:117)
    at com.schrodinger.workbench.ui.SchrodingerUIPlugin.start(SchrodingerUIPlugin.java:102)
    at org.eclipse.osgi.internal.framework.BundleContextImpl$3.run(BundleContextImpl.java:774)
    at org.eclipse.osgi.internal.framework.BundleContextImpl$3.run(BundleContextImpl.java:1)
    at java.security.AccessController.doPrivileged(Native Method)
    at org.eclipse.osgi.internal.framework.BundleContextImpl.startActivator(BundleContextImpl.java:767)
    at org.eclipse.osgi.internal.framework.BundleContextImpl.start(BundleContextImpl.java:724)
    at org.eclipse.osgi.internal.framework.EquinoxBundle.startWorker0(EquinoxBundle.java:932)
    at org.eclipse.osgi.internal.framework.EquinoxBundle$EquinoxModule.startWorker(EquinoxBundle.java:309)
    at org.eclipse.osgi.container.Module.doStart(Module.java:581)
    at org.eclipse.osgi.container.Module.start(Module.java:449)
    at org.eclipse.osgi.framework.util.SecureAction.start(SecureAction.java:470)
    at org.eclipse.osgi.internal.hooks.EclipseLazyStarter.postFindLocalClass(EclipseLazyStarter.java:107)
    at org.eclipse.osgi.internal.loader.classpath.ClasspathManager.findLocalClass(ClasspathManager.java:529)
    at org.eclipse.osgi.internal.loader.ModuleClassLoader.findLocalClass(ModuleClassLoader.java:325)
    at org.eclipse.osgi.internal.loader.BundleLoader.findLocalClass(BundleLoader.java:345)
    at org.eclipse.osgi.internal.loader.BundleLoader.findClassInternal(BundleLoader.java:423)
    at org.eclipse.osgi.internal.loader.BundleLoader.findClass(BundleLoader.java:372)
    at org.eclipse.osgi.internal.loader.BundleLoader.findClass(BundleLoader.java:364)
    at org.eclipse.osgi.internal.loader.ModuleClassLoader.loadClass(ModuleClassLoader.java:161)
    at java.lang.ClassLoader.loadClass(ClassLoader.java:357)
    at org.eclipse.osgi.internal.framework.EquinoxBundle.loadClass(EquinoxBundle.java:564)
    at org.eclipse.core.internal.registry.osgi.RegistryStrategyOSGI.createExecutableExtension(RegistryStrategyOSGI.java:174)
    at org.eclipse.core.internal.registry.ExtensionRegistry.createExecutableExtension(ExtensionRegistry.java:905)
    at org.eclipse.core.internal.registry.ConfigurationElement.createExecutableExtension(ConfigurationElement.java:243)
    at org.eclipse.core.internal.registry.ConfigurationElementHandle.createExecutableExtension(ConfigurationElementHandle.java:55)
    at org.knime.core.data.ExtensibleUtilityFactory.readRenderersFromExtensionPoint(ExtensibleUtilityFactory.java:208)
    at org.knime.core.data.ExtensibleUtilityFactory.addRendererFactory(ExtensibleUtilityFactory.java:239)
    at org.knime.chem.types.MoleculeUtilityFactory.addRenderer(MoleculeUtilityFactory.java:192)
    at com.ggasoftware.indigo.knime.plugin.IndigoPlugin.start(IndigoPlugin.java:122)
    at org.eclipse.osgi.internal.framework.BundleContextImpl$3.run(BundleContextImpl.java:774)
    at org.eclipse.osgi.internal.framework.BundleContextImpl$3.run(BundleContextImpl.java:1)
    at java.security.AccessController.doPrivileged(Native Method)
    at org.eclipse.osgi.internal.framework.BundleContextImpl.startActivator(BundleContextImpl.java:767)
    at org.eclipse.osgi.internal.framework.BundleContextImpl.start(BundleContextImpl.java:724)
    at org.eclipse.osgi.internal.framework.EquinoxBundle.startWorker0(EquinoxBundle.java:932)
    at org.eclipse.osgi.internal.framework.EquinoxBundle$EquinoxModule.startWorker(EquinoxBundle.java:309)
    at org.eclipse.osgi.container.Module.doStart(Module.java:581)
    at org.eclipse.osgi.container.Module.start(Module.java:449)
    at org.eclipse.osgi.framework.util.SecureAction.start(SecureAction.java:470)
    at org.eclipse.osgi.internal.hooks.EclipseLazyStarter.postFindLocalClass(EclipseLazyStarter.java:107)
    at org.eclipse.osgi.internal.loader.classpath.ClasspathManager.findLocalClass(ClasspathManager.java:529)
    at org.eclipse.osgi.internal.loader.ModuleClassLoader.findLocalClass(ModuleClassLoader.java:325)
    at org.eclipse.osgi.internal.loader.BundleLoader.findLocalClass(BundleLoader.java:345)
    at org.eclipse.osgi.internal.loader.sources.SingleSourcePackage.loadClass(SingleSourcePackage.java:36)
    at org.eclipse.osgi.internal.loader.BundleLoader.findClassInternal(BundleLoader.java:407)
    at org.eclipse.osgi.internal.loader.BundleLoader.findClass(BundleLoader.java:372)
    at org.eclipse.osgi.internal.loader.BundleLoader.findClass(BundleLoader.java:364)
    at org.eclipse.osgi.internal.loader.buddy.DependentPolicy.loadClass(DependentPolicy.java:55)
    at org.eclipse.osgi.internal.loader.buddy.PolicyHandler.doBuddyClassLoading(PolicyHandler.java:141)
    at org.eclipse.osgi.internal.loader.BundleLoader.findClassInternal(BundleLoader.java:448)
    at org.eclipse.osgi.internal.loader.BundleLoader.findClass(BundleLoader.java:372)
    at org.eclipse.osgi.internal.loader.BundleLoader.findClass(BundleLoader.java:364)
    at org.eclipse.osgi.internal.loader.buddy.DependentPolicy.loadClass(DependentPolicy.java:55)
    at org.eclipse.osgi.internal.loader.buddy.PolicyHandler.doBuddyClassLoading(PolicyHandler.java:141)
    at org.eclipse.osgi.internal.loader.BundleLoader.findClassInternal(BundleLoader.java:448)
    at org.eclipse.osgi.internal.loader.BundleLoader.findClass(BundleLoader.java:372)
    at org.eclipse.osgi.internal.loader.BundleLoader.findClass(BundleLoader.java:364)
    at org.eclipse.osgi.internal.loader.ModuleClassLoader.loadClass(ModuleClassLoader.java:161)
    at java.lang.ClassLoader.loadClass(ClassLoader.java:357)
    at java.lang.Class.forName0(Native Method)
    at java.lang.Class.forName(Class.java:264)
    at org.knime.core.data.ExtensibleUtilityFactory.loadAllFactories(ExtensibleUtilityFactory.java:383)
    at org.knime.core.data.ExtensibleUtilityFactory.getAllFactories(ExtensibleUtilityFactory.java:351)
    at org.knime.workbench.ui.preferences.PreferenceInitializer.initializeDefaultPreferences(PreferenceInitializer.java:128)
    at org.eclipse.core.internal.preferences.PreferenceServiceRegistryHelper$1.run(PreferenceServiceRegistryHelper.java:298)
    at org.eclipse.core.runtime.SafeRunner.run(SafeRunner.java:42)
    at org.eclipse.core.internal.preferences.PreferenceServiceRegistryHelper.runInitializer(PreferenceServiceRegistryHelper.java:301)
    at org.eclipse.core.internal.preferences.PreferenceServiceRegistryHelper.applyRuntimeDefaults(PreferenceServiceRegistryHelper.java:131)
    at org.eclipse.core.internal.preferences.PreferencesService.applyRuntimeDefaults(PreferencesService.java:370)
    at org.eclipse.core.internal.preferences.DefaultPreferences.applyRuntimeDefaults(DefaultPreferences.java:222)
    at org.eclipse.core.internal.preferences.DefaultPreferences.load(DefaultPreferences.java:276)
    at org.eclipse.core.internal.preferences.EclipsePreferences.create(EclipsePreferences.java:370)
    at org.eclipse.core.internal.preferences.EclipsePreferences.internalNode(EclipsePreferences.java:623)
    at org.eclipse.core.internal.preferences.EclipsePreferences.node(EclipsePreferences.java:766)
    at org.eclipse.core.internal.preferences.AbstractScope.getNode(AbstractScope.java:38)
    at org.eclipse.core.runtime.preferences.DefaultScope.getNode(DefaultScope.java:74)
    at org.eclipse.ui.preferences.ScopedPreferenceStore.getDefaultPreferences(ScopedPreferenceStore.java:237)
    at org.eclipse.ui.preferences.ScopedPreferenceStore.getPreferenceNodes(ScopedPreferenceStore.java:268)
    at org.eclipse.ui.preferences.ScopedPreferenceStore.internalGet(ScopedPreferenceStore.java:418)
    at org.eclipse.ui.preferences.ScopedPreferenceStore.getInt(ScopedPreferenceStore.java:436)
    at org.knime.workbench.ui.KNIMEUIPlugin.start(KNIMEUIPlugin.java:135)
    at org.eclipse.osgi.internal.framework.BundleContextImpl$3.run(BundleContextImpl.java:774)
    at org.eclipse.osgi.internal.framework.BundleContextImpl$3.run(BundleContextImpl.java:1)
    at java.security.AccessController.doPrivileged(Native Method)
    at org.eclipse.osgi.internal.framework.BundleContextImpl.startActivator(BundleContextImpl.java:767)
    at org.eclipse.osgi.internal.framework.BundleContextImpl.start(BundleContextImpl.java:724)
    at org.eclipse.osgi.internal.framework.EquinoxBundle.startWorker0(EquinoxBundle.java:932)
    at org.eclipse.osgi.internal.framework.EquinoxBundle$EquinoxModule.startWorker(EquinoxBundle.java:309)
    at org.eclipse.osgi.container.Module.doStart(Module.java:581)
    at org.eclipse.osgi.container.Module.start(Module.java:449)
    at org.eclipse.osgi.framework.util.SecureAction.start(SecureAction.java:470)
    at org.eclipse.osgi.internal.hooks.EclipseLazyStarter.postFindLocalClass(EclipseLazyStarter.java:107)
    at org.eclipse.osgi.internal.loader.classpath.ClasspathManager.findLocalClass(ClasspathManager.java:529)
    at org.eclipse.osgi.internal.loader.ModuleClassLoader.findLocalClass(ModuleClassLoader.java:325)
    at org.eclipse.osgi.internal.loader.BundleLoader.findLocalClass(BundleLoader.java:345)
    at org.eclipse.osgi.internal.loader.sources.SingleSourcePackage.loadClass(SingleSourcePackage.java:36)
    at org.eclipse.osgi.internal.loader.BundleLoader.findClassInternal(BundleLoader.java:419)
    at org.eclipse.osgi.internal.loader.BundleLoader.findClass(BundleLoader.java:372)
    at org.eclipse.osgi.internal.loader.BundleLoader.findClass(BundleLoader.java:364)
    at org.eclipse.osgi.internal.loader.ModuleClassLoader.loadClass(ModuleClassLoader.java:161)
    at java.lang.ClassLoader.loadClass(ClassLoader.java:357)
    at org.knime.product.rcp.KNIMEApplicationActionBarAdvisor.makeActions(KNIMEApplicationActionBarAdvisor.java:206)
    at org.eclipse.ui.application.ActionBarAdvisor.fillActionBars(ActionBarAdvisor.java:149)
    at org.knime.product.rcp.KNIMEApplicationActionBarAdvisor.fillActionBars(KNIMEApplicationActionBarAdvisor.java:485)
    at org.eclipse.ui.internal.WorkbenchWindow.fillActionBars(WorkbenchWindow.java:2583)
    at org.eclipse.ui.internal.WorkbenchWindow.setup(WorkbenchWindow.java:667)
    at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
    at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
    at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
    at java.lang.reflect.Method.invoke(Method.java:497)
    at org.eclipse.e4.core.internal.di.MethodRequestor.execute(MethodRequestor.java:55)
    at org.eclipse.e4.core.internal.di.InjectorImpl.processAnnotated(InjectorImpl.java:966)
    at org.eclipse.e4.core.internal.di.InjectorImpl.inject(InjectorImpl.java:151)
    at org.eclipse.e4.core.internal.di.InjectorImpl.inject(InjectorImpl.java:118)
    at org.eclipse.e4.core.contexts.ContextInjectionFactory.inject(ContextInjectionFactory.java:73)
    at org.eclipse.ui.internal.Workbench.createWorkbenchWindow(Workbench.java:1525)
    at org.eclipse.ui.internal.Workbench.getActiveWorkbenchWindow(Workbench.java:1499)
    at org.eclipse.ui.internal.services.WorkbenchSourceProvider.updateActiveShell(WorkbenchSourceProvider.java:923)
    at org.eclipse.ui.internal.services.WorkbenchSourceProvider.getCurrentState(WorkbenchSourceProvider.java:117)
    at org.eclipse.ui.internal.services.WorkbenchSourceProvider$6.handleEvent(WorkbenchSourceProvider.java:683)
    at org.eclipse.swt.widgets.EventTable.sendEvent(EventTable.java:84)
    at org.eclipse.swt.widgets.Display.filterEvent(Display.java:1605)
    at org.eclipse.swt.widgets.Widget.sendEvent(Widget.java:1339)
    at org.eclipse.swt.widgets.Widget.sendEvent(Widget.java:1366)
    at org.eclipse.swt.widgets.Widget.sendEvent(Widget.java:1345)
    at org.eclipse.swt.widgets.Shell.filterProc(Shell.java:791)
    at org.eclipse.swt.widgets.Display.filterProc(Display.java:1621)
    at org.eclipse.swt.internal.gtk.OS._g_main_context_iteration(Native Method)
    at org.eclipse.swt.internal.gtk.OS.g_main_context_iteration(OS.java:2495)
    at org.eclipse.swt.widgets.Display.readAndDispatch(Display.java:4141)
    at org.eclipse.e4.ui.internal.workbench.swt.PartRenderingEngine$4.run(PartRenderingEngine.java:1121)
    at org.eclipse.core.databinding.observable.Realm.runWithDefault(Realm.java:336)
    at org.eclipse.e4.ui.internal.workbench.swt.PartRenderingEngine.run(PartRenderingEngine.java:1022)
    at org.eclipse.e4.ui.internal.workbench.E4Workbench.createAndRunUI(E4Workbench.java:150)
    at org.eclipse.ui.internal.Workbench$5.run(Workbench.java:687)
    at org.eclipse.core.databinding.observable.Realm.runWithDefault(Realm.java:336)
    at org.eclipse.ui.internal.Workbench.createAndRunWorkbench(Workbench.java:604)
    at org.eclipse.ui.PlatformUI.createAndRunWorkbench(PlatformUI.java:148)
    at org.knime.product.rcp.KNIMEApplication.start(KNIMEApplication.java:140)
    at org.eclipse.equinox.internal.app.EclipseAppHandle.run(EclipseAppHandle.java:196)
    at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.runApplication(EclipseAppLauncher.java:134)
    at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.start(EclipseAppLauncher.java:104)
    at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:388)
    at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:243)
    at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
    at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
    at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
    at java.lang.reflect.Method.invoke(Method.java:497)
    at org.eclipse.equinox.launcher.Main.invokeFramework(Main.java:673)
    at org.eclipse.equinox.launcher.Main.basicRun(Main.java:610)
    at org.eclipse.equinox.launcher.Main.run(Main.java:1519)
    at org.eclipse.equinox.launcher.Main.main(Main.java:1492)
java.lang.NoSuchMethodException: org.knime.chem.types.Mol2Cell.<init>(java.lang.String)
    at java.lang.Class.getConstructor0(Class.java:3082)
    at java.lang.Class.getConstructor(Class.java:1825)
    at com.schrodinger.knime.util.MAEFileUtils.<clinit>(MAEFileUtils.java:5189)
    at com.schrodinger.knime.util.PythonService.init(PythonService.java:49)
    at com.schrodinger.knime.util.PythonService.start(PythonService.java:117)
    at com.schrodinger.workbench.ui.SchrodingerUIPlugin.start(SchrodingerUIPlugin.java:102)
    at org.eclipse.osgi.internal.framework.BundleContextImpl$3.run(BundleContextImpl.java:774)
    at org.eclipse.osgi.internal.framework.BundleContextImpl$3.run(BundleContextImpl.java:1)
    at java.security.AccessController.doPrivileged(Native Method)
    at org.eclipse.osgi.internal.framework.BundleContextImpl.startActivator(BundleContextImpl.java:767)
    at org.eclipse.osgi.internal.framework.BundleContextImpl.start(BundleContextImpl.java:724)
    at org.eclipse.osgi.internal.framework.EquinoxBundle.startWorker0(EquinoxBundle.java:932)
    at org.eclipse.osgi.internal.framework.EquinoxBundle$EquinoxModule.startWorker(EquinoxBundle.java:309)
    at org.eclipse.osgi.container.Module.doStart(Module.java:581)
    at org.eclipse.osgi.container.Module.start(Module.java:449)
    at org.eclipse.osgi.framework.util.SecureAction.start(SecureAction.java:470)
    at org.eclipse.osgi.internal.hooks.EclipseLazyStarter.postFindLocalClass(EclipseLazyStarter.java:107)
    at org.eclipse.osgi.internal.loader.classpath.ClasspathManager.findLocalClass(ClasspathManager.java:529)
    at org.eclipse.osgi.internal.loader.ModuleClassLoader.findLocalClass(ModuleClassLoader.java:325)
    at org.eclipse.osgi.internal.loader.BundleLoader.findLocalClass(BundleLoader.java:345)
    at org.eclipse.osgi.internal.loader.BundleLoader.findClassInternal(BundleLoader.java:423)
    at org.eclipse.osgi.internal.loader.BundleLoader.findClass(BundleLoader.java:372)
    at org.eclipse.osgi.internal.loader.BundleLoader.findClass(BundleLoader.java:364)
    at org.eclipse.osgi.internal.loader.ModuleClassLoader.loadClass(ModuleClassLoader.java:161)
    at java.lang.ClassLoader.loadClass(ClassLoader.java:357)
    at org.eclipse.osgi.internal.framework.EquinoxBundle.loadClass(EquinoxBundle.java:564)
    at org.eclipse.core.internal.registry.osgi.RegistryStrategyOSGI.createExecutableExtension(RegistryStrategyOSGI.java:174)
    at org.eclipse.core.internal.registry.ExtensionRegistry.createExecutableExtension(ExtensionRegistry.java:905)
    at org.eclipse.core.internal.registry.ConfigurationElement.createExecutableExtension(ConfigurationElement.java:243)
    at org.eclipse.core.internal.registry.ConfigurationElementHandle.createExecutableExtension(ConfigurationElementHandle.java:55)
    at org.knime.core.data.ExtensibleUtilityFactory.readRenderersFromExtensionPoint(ExtensibleUtilityFactory.java:208)
    at org.knime.core.data.ExtensibleUtilityFactory.addRendererFactory(ExtensibleUtilityFactory.java:239)
    at org.knime.chem.types.MoleculeUtilityFactory.addRenderer(MoleculeUtilityFactory.java:192)
    at com.ggasoftware.indigo.knime.plugin.IndigoPlugin.start(IndigoPlugin.java:122)
    at org.eclipse.osgi.internal.framework.BundleContextImpl$3.run(BundleContextImpl.java:774)
    at org.eclipse.osgi.internal.framework.BundleContextImpl$3.run(BundleContextImpl.java:1)
    at java.security.AccessController.doPrivileged(Native Method)
    at org.eclipse.osgi.internal.framework.BundleContextImpl.startActivator(BundleContextImpl.java:767)
    at org.eclipse.osgi.internal.framework.BundleContextImpl.start(BundleContextImpl.java:724)
    at org.eclipse.osgi.internal.framework.EquinoxBundle.startWorker0(EquinoxBundle.java:932)
    at org.eclipse.osgi.internal.framework.EquinoxBundle$EquinoxModule.startWorker(EquinoxBundle.java:309)
    at org.eclipse.osgi.container.Module.doStart(Module.java:581)
    at org.eclipse.osgi.container.Module.start(Module.java:449)
    at org.eclipse.osgi.framework.util.SecureAction.start(SecureAction.java:470)
    at org.eclipse.osgi.internal.hooks.EclipseLazyStarter.postFindLocalClass(EclipseLazyStarter.java:107)
    at org.eclipse.osgi.internal.loader.classpath.ClasspathManager.findLocalClass(ClasspathManager.java:529)
    at org.eclipse.osgi.internal.loader.ModuleClassLoader.findLocalClass(ModuleClassLoader.java:325)
    at org.eclipse.osgi.internal.loader.BundleLoader.findLocalClass(BundleLoader.java:345)
    at org.eclipse.osgi.internal.loader.sources.SingleSourcePackage.loadClass(SingleSourcePackage.java:36)
    at org.eclipse.osgi.internal.loader.BundleLoader.findClassInternal(BundleLoader.java:407)
    at org.eclipse.osgi.internal.loader.BundleLoader.findClass(BundleLoader.java:372)
    at org.eclipse.osgi.internal.loader.BundleLoader.findClass(BundleLoader.java:364)
    at org.eclipse.osgi.internal.loader.buddy.DependentPolicy.loadClass(DependentPolicy.java:55)
    at org.eclipse.osgi.internal.loader.buddy.PolicyHandler.doBuddyClassLoading(PolicyHandler.java:141)
    at org.eclipse.osgi.internal.loader.BundleLoader.findClassInternal(BundleLoader.java:448)
    at org.eclipse.osgi.internal.loader.BundleLoader.findClass(BundleLoader.java:372)
    at org.eclipse.osgi.internal.loader.BundleLoader.findClass(BundleLoader.java:364)
    at org.eclipse.osgi.internal.loader.buddy.DependentPolicy.loadClass(DependentPolicy.java:55)
    at org.eclipse.osgi.internal.loader.buddy.PolicyHandler.doBuddyClassLoading(PolicyHandler.java:141)
    at org.eclipse.osgi.internal.loader.BundleLoader.findClassInternal(BundleLoader.java:448)
    at org.eclipse.osgi.internal.loader.BundleLoader.findClass(BundleLoader.java:372)
    at org.eclipse.osgi.internal.loader.BundleLoader.findClass(BundleLoader.java:364)
    at org.eclipse.osgi.internal.loader.ModuleClassLoader.loadClass(ModuleClassLoader.java:161)
    at java.lang.ClassLoader.loadClass(ClassLoader.java:357)
    at java.lang.Class.forName0(Native Method)
    at java.lang.Class.forName(Class.java:264)
    at org.knime.core.data.ExtensibleUtilityFactory.loadAllFactories(ExtensibleUtilityFactory.java:383)
    at org.knime.core.data.ExtensibleUtilityFactory.getAllFactories(ExtensibleUtilityFactory.java:351)
    at org.knime.workbench.ui.preferences.PreferenceInitializer.initializeDefaultPreferences(PreferenceInitializer.java:128)
    at org.eclipse.core.internal.preferences.PreferenceServiceRegistryHelper$1.run(PreferenceServiceRegistryHelper.java:298)
    at org.eclipse.core.runtime.SafeRunner.run(SafeRunner.java:42)
    at org.eclipse.core.internal.preferences.PreferenceServiceRegistryHelper.runInitializer(PreferenceServiceRegistryHelper.java:301)
    at org.eclipse.core.internal.preferences.PreferenceServiceRegistryHelper.applyRuntimeDefaults(PreferenceServiceRegistryHelper.java:131)
    at org.eclipse.core.internal.preferences.PreferencesService.applyRuntimeDefaults(PreferencesService.java:370)
    at org.eclipse.core.internal.preferences.DefaultPreferences.applyRuntimeDefaults(DefaultPreferences.java:222)
    at org.eclipse.core.internal.preferences.DefaultPreferences.load(DefaultPreferences.java:276)
    at org.eclipse.core.internal.preferences.EclipsePreferences.create(EclipsePreferences.java:370)
    at org.eclipse.core.internal.preferences.EclipsePreferences.internalNode(EclipsePreferences.java:623)
    at org.eclipse.core.internal.preferences.EclipsePreferences.node(EclipsePreferences.java:766)
    at org.eclipse.core.internal.preferences.AbstractScope.getNode(AbstractScope.java:38)
    at org.eclipse.core.runtime.preferences.DefaultScope.getNode(DefaultScope.java:74)
    at org.eclipse.ui.preferences.ScopedPreferenceStore.getDefaultPreferences(ScopedPreferenceStore.java:237)
    at org.eclipse.ui.preferences.ScopedPreferenceStore.getPreferenceNodes(ScopedPreferenceStore.java:268)
    at org.eclipse.ui.preferences.ScopedPreferenceStore.internalGet(ScopedPreferenceStore.java:418)
    at org.eclipse.ui.preferences.ScopedPreferenceStore.getInt(ScopedPreferenceStore.java:436)
    at org.knime.workbench.ui.KNIMEUIPlugin.start(KNIMEUIPlugin.java:135)
    at org.eclipse.osgi.internal.framework.BundleContextImpl$3.run(BundleContextImpl.java:774)
    at org.eclipse.osgi.internal.framework.BundleContextImpl$3.run(BundleContextImpl.java:1)
    at java.security.AccessController.doPrivileged(Native Method)
    at org.eclipse.osgi.internal.framework.BundleContextImpl.startActivator(BundleContextImpl.java:767)
    at org.eclipse.osgi.internal.framework.BundleContextImpl.start(BundleContextImpl.java:724)
    at org.eclipse.osgi.internal.framework.EquinoxBundle.startWorker0(EquinoxBundle.java:932)
    at org.eclipse.osgi.internal.framework.EquinoxBundle$EquinoxModule.startWorker(EquinoxBundle.java:309)
    at org.eclipse.osgi.container.Module.doStart(Module.java:581)
    at org.eclipse.osgi.container.Module.start(Module.java:449)
    at org.eclipse.osgi.framework.util.SecureAction.start(SecureAction.java:470)
    at org.eclipse.osgi.internal.hooks.EclipseLazyStarter.postFindLocalClass(EclipseLazyStarter.java:107)
    at org.eclipse.osgi.internal.loader.classpath.ClasspathManager.findLocalClass(ClasspathManager.java:529)
    at org.eclipse.osgi.internal.loader.ModuleClassLoader.findLocalClass(ModuleClassLoader.java:325)
    at org.eclipse.osgi.internal.loader.BundleLoader.findLocalClass(BundleLoader.java:345)
    at org.eclipse.osgi.internal.loader.sources.SingleSourcePackage.loadClass(SingleSourcePackage.java:36)
    at org.eclipse.osgi.internal.loader.BundleLoader.findClassInternal(BundleLoader.java:419)
    at org.eclipse.osgi.internal.loader.BundleLoader.findClass(BundleLoader.java:372)
    at org.eclipse.osgi.internal.loader.BundleLoader.findClass(BundleLoader.java:364)
    at org.eclipse.osgi.internal.loader.ModuleClassLoader.loadClass(ModuleClassLoader.java:161)
    at java.lang.ClassLoader.loadClass(ClassLoader.java:357)
    at org.knime.product.rcp.KNIMEApplicationActionBarAdvisor.makeActions(KNIMEApplicationActionBarAdvisor.java:206)
    at org.eclipse.ui.application.ActionBarAdvisor.fillActionBars(ActionBarAdvisor.java:149)
    at org.knime.product.rcp.KNIMEApplicationActionBarAdvisor.fillActionBars(KNIMEApplicationActionBarAdvisor.java:485)
    at org.eclipse.ui.internal.WorkbenchWindow.fillActionBars(WorkbenchWindow.java:2583)
    at org.eclipse.ui.internal.WorkbenchWindow.setup(WorkbenchWindow.java:667)
    at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
    at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
    at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
    at java.lang.reflect.Method.invoke(Method.java:497)
    at org.eclipse.e4.core.internal.di.MethodRequestor.execute(MethodRequestor.java:55)
    at org.eclipse.e4.core.internal.di.InjectorImpl.processAnnotated(InjectorImpl.java:966)
    at org.eclipse.e4.core.internal.di.InjectorImpl.inject(InjectorImpl.java:151)
    at org.eclipse.e4.core.internal.di.InjectorImpl.inject(InjectorImpl.java:118)
    at org.eclipse.e4.core.contexts.ContextInjectionFactory.inject(ContextInjectionFactory.java:73)
    at org.eclipse.ui.internal.Workbench.createWorkbenchWindow(Workbench.java:1525)
    at org.eclipse.ui.internal.Workbench.getActiveWorkbenchWindow(Workbench.java:1499)
    at org.eclipse.ui.internal.services.WorkbenchSourceProvider.updateActiveShell(WorkbenchSourceProvider.java:923)
    at org.eclipse.ui.internal.services.WorkbenchSourceProvider.getCurrentState(WorkbenchSourceProvider.java:117)
    at org.eclipse.ui.internal.services.WorkbenchSourceProvider$6.handleEvent(WorkbenchSourceProvider.java:683)
    at org.eclipse.swt.widgets.EventTable.sendEvent(EventTable.java:84)
    at org.eclipse.swt.widgets.Display.filterEvent(Display.java:1605)
    at org.eclipse.swt.widgets.Widget.sendEvent(Widget.java:1339)
    at org.eclipse.swt.widgets.Widget.sendEvent(Widget.java:1366)
    at org.eclipse.swt.widgets.Widget.sendEvent(Widget.java:1345)
    at org.eclipse.swt.widgets.Shell.filterProc(Shell.java:791)
    at org.eclipse.swt.widgets.Display.filterProc(Display.java:1621)
    at org.eclipse.swt.internal.gtk.OS._g_main_context_iteration(Native Method)
    at org.eclipse.swt.internal.gtk.OS.g_main_context_iteration(OS.java:2495)
    at org.eclipse.swt.widgets.Display.readAndDispatch(Display.java:4141)
    at org.eclipse.e4.ui.internal.workbench.swt.PartRenderingEngine$4.run(PartRenderingEngine.java:1121)
    at org.eclipse.core.databinding.observable.Realm.runWithDefault(Realm.java:336)
    at org.eclipse.e4.ui.internal.workbench.swt.PartRenderingEngine.run(PartRenderingEngine.java:1022)
    at org.eclipse.e4.ui.internal.workbench.E4Workbench.createAndRunUI(E4Workbench.java:150)
    at org.eclipse.ui.internal.Workbench$5.run(Workbench.java:687)
    at org.eclipse.core.databinding.observable.Realm.runWithDefault(Realm.java:336)
    at org.eclipse.ui.internal.Workbench.createAndRunWorkbench(Workbench.java:604)
    at org.eclipse.ui.PlatformUI.createAndRunWorkbench(PlatformUI.java:148)
    at org.knime.product.rcp.KNIMEApplication.start(KNIMEApplication.java:140)
    at org.eclipse.equinox.internal.app.EclipseAppHandle.run(EclipseAppHandle.java:196)
    at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.runApplication(EclipseAppLauncher.java:134)
    at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.start(EclipseAppLauncher.java:104)
    at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:388)
    at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:243)
    at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
    at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
    at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
    at java.lang.reflect.Method.invoke(Method.java:497)
    at org.eclipse.equinox.launcher.Main.invokeFramework(Main.java:673)
    at org.eclipse.equinox.launcher.Main.basicRun(Main.java:610)
    at org.eclipse.equinox.launcher.Main.run(Main.java:1519)
    at org.eclipse.equinox.launcher.Main.main(Main.java:1492)
/home/NAME/installed_program/knime-full_3.3.1/jre/bin/java: symbol lookup error: /usr/lib64/libwebkit-1.0.so.2: undefined symbol: soup_message_set_first_party

----------------------------------------------------------------------------------------

 

 

Error window message 2

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JVM terminated. Exit code=127
/home/NAME/installed_program/knime-full_3.3.1/jre/bin/java
-server
-Dsun.java2d.d3d=false
-Dosgi.classloader.lock=classname
-XX:+UnlockDiagnosticVMOptions
-XX:+UnsyncloadClass
-Dsun.net.client.defaultReadTimeout=0
-XX:CompileCommand=exclude,javax/swing/text/GlyphView,getBreakSpot
-Xmx16384m
-Dorg.eclipse.swt.internal.gtk.disablePrinting
-jar /home/NAME/installed_program/knime-full_3.3.1//plugins/org.eclipse.equinox.launcher_1.3.200.v20160318-1642.jar
-os linux
-ws gtk
-arch x86_64
-showsplash
-launcher /home/NAME/installed_program/knime-full_3.3.1/knime
-name Knime
--launcher.library /home/NAME/installed_program/knime-full_3.3.1//plugins/org.eclipse.equinox.launcher.gtk.linux.x86_64_1.1.400.v20160518-1444/eclipse_1617.so
-startup /home/NAME/installed_program/knime-full_3.3.1//plugins/org.eclipse.equinox.launcher_1.3.200.v20160318-1642.jar
--launcher.overrideVmargs
-exitdata 35800a
-vm /home/NAME/installed_program/knime-full_3.3.1/jre/bin/java
-vmargs
-server
-Dsun.java2d.d3d=false
-Dosgi.classloader.lock=classname
-XX:+UnlockDiagnosticVMOptions
-XX:+UnsyncloadClass
-Dsun.net.client.defaultReadTimeout=0
-XX:CompileCommand=exclude,javax/swing/text/GlyphView,getBreakSpot
-Xmx16384m
-Dorg.eclipse.swt.internal.gtk.disablePrinting
-jar /home/NAME/installed_program/knime-full_3.3.1//plugins/org.eclipse.equinox.launcher_1.3.200.v20160318-1642.jar 

----------------------------------------------------------------------------------------

This problem was fixed by update libsoup.

Thanks!

Thanks for updating with the answer. Much appreciated.