Neurite Analysis

KNIME Extensions
1

I need an automated neurite analysis software that will be able to analyze thousands of images automatically.
Ideally, the software will be able to: (If only a partial analysis is possible, that would still be extremely helpful!)

  1. count the number of cells in image
  2. identify the neurites and measure the length of the neurites
  3. count the number of neurites coming out of each cell
  4. count how many cells do not have any neurite growth

Thank you in advance.

2

Hi @neruiteanalysis,

I believe it is possible to implement at least parts of this in KNIME AP, for a start take a look at workflows like Application: Count Chromosomes or Count Cells.
Especially 1, 3, and 4. Automatic length measurements will requires some nifty engineering to get working.

best,
Gabriel

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