Nodepit Bug? - Did my Knime die?

After Installation of NodePit, knime takes long time to start, and when it starts all consoles are empty, also menu bar is missing. The only option that I have is the “Quick Access”. Did my Knime die? Any idea?

I also removed the NodePit, but still Knime does not open properly or working at all. See below screenshot:

During start, the NodePit plugin requests a list of known nodes from nodepit.com. Even if nodepit.com cannot be reached, this should not cause any delays with starting. However, it’s still worth to check whether your network requires any proxy configuration and if so, to set this in KNIME’s preferences -> General -> Network Connections.

To further localize the issue, could you please share your KNINME log file? It is located in your KNIME workspace directory in .metadata/knime/knime.log

If you prefer not to share the log file publicly here in the forum, feel free to send it to us at mail@nodepit.com and we’ll get back to you.

Thanks!

Hi,
thank you for your quick reply! I have attached the (part of it due to space limitation) log here. However, I reinstall knime, as I am eager to continue work.
Thanks

2019-11-26 13:24:31,292 : WARN : KNIME-Worker-139 : : Node : Line Chart (JFreeChart) : 2:251:252:269:264 : Only the first 500 rows are displayed.
Missing values are ignored in the view!
2019-11-26 13:24:31,381 : WARN : KNIME-Worker-139 : : Node : Image Writer (Port) : 2:251:252:269:263 : Output file ‘C:\TEMPKNIME\4.04455E14_Only500Raw.png’ exists and will be overwritten
2019-11-26 13:26:30,720 : WARN : main : : Node : Image Writer (Port) : 2:251:252:269:263 : Output file ‘C:\TEMPKNIME\4.04455E14_Only500Raw.png’ exists and will be overwritten
2019-11-26 13:26:30,843 : WARN : KNIME-Worker-141 : : Node : Line Chart (JFreeChart) : 2:251:252:269:264 : Only the first 500 rows are displayed.
Missing values are ignored in the view!
2019-11-26 13:26:30,910 : WARN : KNIME-Worker-141 : : Node : Image Writer (Port) : 2:251:252:269:263 : Output file ‘C:\TEMPKNIME\4.04455E14_Only500Raw.png’ exists and will be overwritten
2019-11-26 13:27:26,623 : WARN : main : : Node : Image Writer (Port) : 2:251:252:269:263 : Output file ‘C:\TEMPKNIME\4.04455E14_Only500Raw.png’ exists and will be overwritten
2019-11-26 13:27:27,834 : WARN : KNIME-Worker-142 : : Node : Line Chart (JFreeChart) : 2:251:252:269:264 : Only the first 500 rows are displayed.
Missing values are ignored in the view!
2019-11-26 13:27:27,891 : WARN : KNIME-Worker-142 : : Node : Image Writer (Port) : 2:251:252:269:263 : Output file ‘C:\TEMPKNIME\4.04455E14_Only500Raw.png’ exists and will be overwritten
2019-11-26 13:28:01,220 : WARN : ModalContext : : WorkflowManager : : : Workflow contains nodes with duplicate parameter name (will be made unique by appending node IDs): “file-chooser”
2019-11-26 15:02:09,509 : WARN : main : : Node : CSV Reader : 2:251:252:270 : Errors overwriting node settings with flow variables: Unknown variable “Location”
2019-11-26 15:02:21,797 : WARN : main : : Node : CSV Reader : 2:251:252:270 : Errors overwriting node settings with flow variables: Unknown variable “Location”
2019-11-26 15:03:12,458 : WARN : main : : Node : String Manipulation (Variable) : 2:251:252:273:207 : No such variable “Location” of type STRING
2019-11-26 15:03:16,060 : WARN : AWT-EventQueue-0 : : RController : Table to R : 2:251:252:271 : R Version 3.5.0 and Rserve <= 1.8-6 currently have issues preventing their full use in KNIME. A future release of R and/or Rserve may fix these issues.
2019-11-26 15:03:35,273 : WARN : KNIME-Worker-144 : : RController : Table to R : 2:251:252:271 : R Version 3.5.0 and Rserve <= 1.8-6 currently have issues preventing their full use in KNIME. A future release of R and/or Rserve may fix these issues.
2019-11-26 15:03:37,627 : WARN : KNIME-Worker-145 : : RController : R to Table : 2:251:252:272 : R Version 3.5.0 and Rserve <= 1.8-6 currently have issues preventing their full use in KNIME. A future release of R and/or Rserve may fix these issues.
2019-11-26 15:03:57,680 : WARN : KNIME-Worker-145 : : Node : String Manipulation (Variable) : 2:251:252:273:207 : No such variable “Location” of type STRING
2019-11-26 15:04:14,347 : WARN : main : : WrappedNodeDialog : String Manipulation (Variable) : 2:251:252:273:207 : failed to apply settings: Ambiguous return type! Use ‘string()’ or another function from the “Convert Type” category to specify the return type.
org.knime.core.node.InvalidSettingsException: Ambiguous return type! Use ‘string()’ or another function from the “Convert Type” category to specify the return type.
at org.knime.base.node.preproc.stringmanipulation.StringManipulationSettings.determineReturnType(StringManipulationSettings.java:352)
at org.knime.base.node.preproc.stringmanipulation.StringManipulationSettings.getJavaScriptingSettings(StringManipulationSettings.java:403)
at org.knime.base.node.preproc.stringmanipulation.StringManipulationNodeDialog.saveSettingsTo(StringManipulationNodeDialog.java:417)
at org.knime.core.node.NodeDialogPane.internalSaveSettingsTo(NodeDialogPane.java:485)
at org.knime.core.node.NodeDialogPane$5.run(NodeDialogPane.java:722)
at org.knime.core.node.util.ViewUtils$3.run(ViewUtils.java:353)
at org.knime.core.node.util.ViewUtils$2.run(ViewUtils.java:155)
at java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:311)
at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:758)
at java.awt.EventQueue.access$500(EventQueue.java:97)
at java.awt.EventQueue$3.run(EventQueue.java:709)
at java.awt.EventQueue$3.run(EventQueue.java:703)
at java.security.AccessController.doPrivileged(Native Method)
at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:74)
at java.awt.EventQueue.dispatchEvent(EventQueue.java:728)
at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:205)
at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:116)
at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:105)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:93)
at java.awt.EventDispatchThread.run(EventDispatchThread.java:82)
2019-11-26 15:04:19,860 : WARN : main : : WrappedNodeDialog : String Manipulation (Variable) : 2:251:252:273:207 : failed to apply settings: Ambiguous return type! Use ‘string()’ or another function from the “Convert Type” category to specify the return type.
org.knime.core.node.InvalidSettingsException: Ambiguous return type! Use ‘string()’ or another function from the “Convert Type” category to specify the return type.
at org.knime.base.node.preproc.stringmanipulation.StringManipulationSettings.determineReturnType(StringManipulationSettings.java:352)
at org.knime.base.node.preproc.stringmanipulation.StringManipulationSettings.getJavaScriptingSettings(StringManipulationSettings.java:403)
at org.knime.base.node.preproc.stringmanipulation.StringManipulationNodeDialog.saveSettingsTo(StringManipulationNodeDialog.java:417)
at org.knime.core.node.NodeDialogPane.internalSaveSettingsTo(NodeDialogPane.java:485)
at org.knime.core.node.NodeDialogPane$5.run(NodeDialogPane.java:722)
at org.knime.core.node.util.ViewUtils$3.run(ViewUtils.java:353)
at org.knime.core.node.util.ViewUtils$2.run(ViewUtils.java:155)
at java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:311)
at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:758)
at java.awt.EventQueue.access$500(EventQueue.java:97)
at java.awt.EventQueue$3.run(EventQueue.java:709)
at java.awt.EventQueue$3.run(EventQueue.java:703)
at java.security.AccessController.doPrivileged(Native Method)
at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:74)
at java.awt.EventQueue.dispatchEvent(EventQueue.java:728)
at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:205)
at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:116)
at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:105)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:93)
at java.awt.EventDispatchThread.run(EventDispatchThread.java:82)
2019-11-26 15:04:43,640 : WARN : main : : WrappedNodeDialog : String Manipulation (Variable) : 2:251:252:273:207 : failed to apply settings: Ambiguous return type! Use ‘string()’ or another function from the “Convert Type” category to specify the return type.
org.knime.core.node.InvalidSettingsException: Ambiguous return type! Use ‘string()’ or another function from the “Convert Type” category to specify the return type.
at org.knime.base.node.preproc.stringmanipulation.StringManipulationSettings.determineReturnType(StringManipulationSettings.java:368)
at org.knime.base.node.preproc.stringmanipulation.StringManipulationSettings.getJavaScriptingSettings(StringManipulationSettings.java:403)
at org.knime.base.node.preproc.stringmanipulation.StringManipulationNodeDialog.saveSettingsTo(StringManipulationNodeDialog.java:417)
at org.knime.core.node.NodeDialogPane.internalSaveSettingsTo(NodeDialogPane.java:485)
at org.knime.core.node.NodeDialogPane$5.run(NodeDialogPane.java:722)
at org.knime.core.node.util.ViewUtils$3.run(ViewUtils.java:353)
at org.knime.core.node.util.ViewUtils$2.run(ViewUtils.java:155)
at java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:311)
at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:758)
at java.awt.EventQueue.access$500(EventQueue.java:97)
at java.awt.EventQueue$3.run(EventQueue.java:709)
at java.awt.EventQueue$3.run(EventQueue.java:703)
at java.security.AccessController.doPrivileged(Native Method)
at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:74)
at java.awt.EventQueue.dispatchEvent(EventQueue.java:728)
at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:205)
at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:116)
at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:105)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:93)
at java.awt.EventDispatchThread.run(EventDispatchThread.java:82)
2019-11-26 15:04:57,901 : WARN : main : : WrappedNodeDialog : String Manipulation (Variable) : 2:251:252:273:207 : failed to apply settings: Ambiguous return type! Use ‘string()’ or another function from the “Convert Type” category to specify the return type.
org.knime.core.node.InvalidSettingsException: Ambiguous return type! Use ‘string()’ or another function from the “Convert Type” category to specify the return type.
at org.knime.base.node.preproc.stringmanipulation.StringManipulationSettings.determineReturnType(StringManipulationSettings.java:368)
at org.knime.base.node.preproc.stringmanipulation.StringManipulationSettings.getJavaScriptingSettings(StringManipulationSettings.java:403)
at org.knime.base.node.preproc.stringmanipulation.StringManipulationNodeDialog.saveSettingsTo(StringManipulationNodeDialog.java:417)
at org.knime.core.node.NodeDialogPane.internalSaveSettingsTo(NodeDialogPane.java:485)
at org.knime.core.node.NodeDialogPane$5.run(NodeDialogPane.java:722)
at org.knime.core.node.util.ViewUtils$3.run(ViewUtils.java:353)
at org.knime.core.node.util.ViewUtils$2.run(ViewUtils.java:155)
at java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:311)
at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:758)
at java.awt.EventQueue.access$500(EventQueue.java:97)
at java.awt.EventQueue$3.run(EventQueue.java:709)
at java.awt.EventQueue$3.run(EventQueue.java:703)
at java.security.AccessController.doPrivileged(Native Method)
at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:74)
at java.awt.EventQueue.dispatchEvent(EventQueue.java:728)
at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:205)
at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:116)
at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:105)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:93)
at java.awt.EventDispatchThread.run(EventDispatchThread.java:82)
2019-11-26 15:05:14,190 : WARN : main : : WrappedNodeDialog : String Manipulation (Variable) : 2:251:252:273:207 : failed to apply settings: Ambiguous return type! Use ‘string()’ or another function from the “Convert Type” category to specify the return type.
org.knime.core.node.InvalidSettingsException: Ambiguous return type! Use ‘string()’ or another function from the “Convert Type” category to specify the return type.
at org.knime.base.node.preproc.stringmanipulation.StringManipulationSettings.determineReturnType(StringManipulationSettings.java:368)
at org.knime.base.node.preproc.stringmanipulation.StringManipulationSettings.getJavaScriptingSettings(StringManipulationSettings.java:403)
at org.knime.base.node.preproc.stringmanipulation.StringManipulationNodeDialog.saveSettingsTo(StringManipulationNodeDialog.java:417)
at org.knime.core.node.NodeDialogPane.internalSaveSettingsTo(NodeDialogPane.java:485)
at org.knime.core.node.NodeDialogPane$5.run(NodeDialogPane.java:722)
at org.knime.core.node.util.ViewUtils$3.run(ViewUtils.java:353)
at org.knime.core.node.util.ViewUtils$2.run(ViewUtils.java:155)
at java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:311)
at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:758)
at java.awt.EventQueue.access$500(EventQueue.java:97)
at java.awt.EventQueue$3.run(EventQueue.java:709)
at java.awt.EventQueue$3.run(EventQueue.java:703)
at java.security.AccessController.doPrivileged(Native Method)
at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:74)
at java.awt.EventQueue.dispatchEvent(EventQueue.java:728)
at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:205)
at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:116)
at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:105)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:93)
at java.awt.EventDispatchThread.run(EventDispatchThread.java:82)
2019-11-26 15:05:48,358 : WARN : main : : Node : Image Writer (Port) : 2:251:252:273:263 : Errors overwriting node settings with flow variables: Unknown variable “PATH_file_IMAGE”
2019-11-26 15:05:49,895 : WARN : main : : Node : String Manipulation (Variable) : 2:251:252:273:207 : No such variable “Location” of type STRING
2019-11-26 15:06:19,431 : WARN : main : : Node : Image Writer (Port) : 2:251:252:273:263 : Errors overwriting node settings with flow variables: Unknown variable “PATH_file_IMAGE”
2019-11-26 15:06:21,183 : WARN : KNIME-Worker-150 : : Node : Line Chart (JFreeChart) : 2:251:252:273:264 : Missing values are ignored in the view!
2019-11-26 15:06:21,275 : WARN : KNIME-Worker-150 : : Node : Image Writer (Port) : 2:251:252:273:263 : Errors overwriting node settings with flow variables: Unknown variable “PATH_file_IMAGE”
2019-11-26 15:08:44,612 : WARN : KNIME-Worker-153 : : RController : Table to R : 2:251:252:275 : R Version 3.5.0 and Rserve <= 1.8-6 currently have issues preventing their full use in KNIME. A future release of R and/or Rserve may fix these issues.
2019-11-26 15:08:47,018 : WARN : KNIME-Worker-154 : : RController : R to Table : 2:251:252:274 : R Version 3.5.0 and Rserve <= 1.8-6 currently have issues preventing their full use in KNIME. A future release of R and/or Rserve may fix these issues.
2019-11-26 15:09:02,980 : WARN : main : : Node : String Manipulation (Variable) : 2:251:252:276:265 : No expression has been set.
2019-11-26 15:09:04,594 : WARN : main : : Node : String Manipulation (Variable) : 2:251:252:276:265 : No expression has been set.
2019-11-26 15:09:07,268 : WARN : KNIME-Worker-154 : : Node : String Manipulation (Variable) : 2:251:252:276:265 : No expression has been set.
2019-11-26 15:09:07,273 : WARN : KNIME-Worker-154 : : Node : Image Writer (Port) : 2:251:252:276:263 : Output file ‘C:\TEMPKNIME\Seasonal_4_TEST.png’ exists and will be overwritten
2019-11-26 15:09:28,994 : WARN : KNIME-Worker-153 : : RController : Table to R : 2:251:252:271 : R Version 3.5.0 and Rserve <= 1.8-6 currently have issues preventing their full use in KNIME. A future release of R and/or Rserve may fix these issues.
2019-11-26 15:09:31,355 : WARN : KNIME-Worker-155 : : RController : R to Table : 2:251:252:272 : R Version 3.5.0 and Rserve <= 1.8-6 currently have issues preventing their full use in KNIME. A future release of R and/or Rserve may fix these issues.
2019-11-26 15:09:35,652 : WARN : main : : Node : String Manipulation (Variable) : 2:251:252:273:265 : No expression has been set.
2019-11-26 15:09:38,979 : WARN : main : : Node : String Manipulation (Variable) : 2:251:252:273:265 : No expression has been set.
2019-11-26 15:09:50,595 : WARN : KNIME-Worker-155 : : Node : String Manipulation (Variable) : 2:251:252:273:265 : No expression has been set.
2019-11-26 15:09:50,598 : WARN : KNIME-Worker-155 : : Node : Image Writer (Port) : 2:251:252:273:263 : Output file ‘C:\TEMPKNIME\Seasonal_4_TEST.png’ exists and will be overwritten
2019-11-26 15:09:50,603 : WARN : KNIME-Worker-153 : : Node : Line Chart (JFreeChart) : 2:251:252:273:264 : Missing values are ignored in the view!
2019-11-26 15:09:50,704 : WARN : KNIME-Worker-153 : : Node : Image Writer (Port) : 2:251:252:273:263 : Output file ‘C:\TEMPKNIME\Seasonal_4_TEST.png’ exists and will be overwritten
2019-11-26 15:12:48,041 : WARN : main : : Node : Create File Name : 2:251:252:278 : Please provide a file name
2019-11-26 15:12:51,611 : WARN : main : : Node : Create File Name : 2:251:252:278 : Please provide a file name
2019-11-26 15:13:16,639 : WARN : main : : Node : Create File Name : 2:251:252:278 : Please provide a file name
2019-11-26 15:18:08,505 : WARN : main : : Node : File Chooser Widget : 2:251:252:278 : No file item present
2019-11-26 15:19:18,310 : WARN : KNIME-Worker-159 : : Node : Line Chart (JFreeChart) : 2:251:252:276:264 : Missing values are ignored in the view!
2019-11-26 15:36:51,340 : WARN : KNIME-Worker-161 : : Node : String Manipulation (Variable) : 2:251:252:280:265 : No expression has been set.
2019-11-26 15:36:52,427 : WARN : KNIME-Worker-162 : : RController : Table to R : 2:251:252:279 : R Version 3.5.0 and Rserve <= 1.8-6 currently have issues preventing their full use in KNIME. A future release of R and/or Rserve may fix these issues.
2019-11-26 15:36:54,839 : WARN : KNIME-Worker-163 : : RController : R to Table : 2:251:252:281 : R Version 3.5.0 and Rserve <= 1.8-6 currently have issues preventing their full use in KNIME. A future release of R and/or Rserve may fix these issues.
2019-11-26 15:37:14,492 : WARN : KNIME-Worker-163 : : Node : String Manipulation (Variable) : 2:251:252:280:265 : No expression has been set.
2019-11-26 15:37:14,498 : WARN : KNIME-Worker-162 : : Node : Line Chart (JFreeChart) : 2:251:252:280:264 : Missing values are ignored in the view!
2019-11-26 15:42:35,936 : WARN : KNIME-Worker-168 : : Node : String Manipulation (Variable) : 2:251:252:282:265 : No expression has been set.
2019-11-26 15:42:37,011 : WARN : KNIME-Worker-169 : : RController : Table to R : 2:251:252:285 : R Version 3.5.0 and Rserve <= 1.8-6 currently have issues preventing their full use in KNIME. A future release of R and/or Rserve may fix these issues.
2019-11-26 15:42:39,403 : WARN : KNIME-Worker-170 : : RController : R to Table : 2:251:252:283 : R Version 3.5.0 and Rserve <= 1.8-6 currently have issues preventing their full use in KNIME. A future release of R and/or Rserve may fix these issues.
2019-11-26 15:42:58,856 : WARN : KNIME-Worker-170 : : Node : String Manipulation (Variable) : 2:251:252:282:265 : No expression has been set.
2019-11-26 15:42:58,862 : WARN : KNIME-Worker-169 : : Node : Line Chart (JFreeChart) : 2:251:252:282:264 : Missing values are ignored in the view!
2019-11-26 16:01:30,290 : WARN : KNIME-Worker-175 : : RController : Table to R : 2:251:252:286 : R Version 3.5.0 and Rserve <= 1.8-6 currently have issues preventing their full use in KNIME. A future release of R and/or Rserve may fix these issues.
2019-11-26 16:01:32,687 : WARN : KNIME-Worker-176 : : RController : R to Table : 2:251:252:287 : R Version 3.5.0 and Rserve <= 1.8-6 currently have issues preventing their full use in KNIME. A future release of R and/or Rserve may fix these issues.
2019-11-26 16:27:36,690 : WARN : main : : Node : Column Aggregator : 2:251:252:289 : Please select at least one aggregation method
2019-11-26 16:36:43,531 : WARN : ModalContext : : WorkflowManager : : : Workflow contains nodes with duplicate parameter name (will be made unique by appending node IDs): “file-chooser”
2019-11-26 16:36:46,242 : ERROR : Clear OSGi configuration : : InvokeInstallSiteAction : : : Could not clean OSGi configuration area: C:\Program Files\KNIME\configuration\org.eclipse.osgi\307\0.cp\os\win32\x86_64\localfile_1_0_0.dll

Email was sent, also.

Thanks – replying by email.

– Philipp

To avoid any misleading information here, I would like to note that I have reinstalled Knime, and NodePit as well. Knime opens and works well with no issue.

2 Likes

Thanks for the feedback. Just to be sure: The issue is solved?

Anyways, I’ll send my email with some troubleshooting steps. Please get back to them, if the issue should re-occur (fingers crossed that it’ll not)

1 Like

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