Running .jar applications and/or komplex Java source code in KNIME?

Hi all,

I wonder if it is possible to include SmartCyp into Knime (or had that been done already)?

This software uses chemical structure data (.sdf, .smi, you name it, depending on OpenBabel) as an input. It comes either as a .jar executable or as a set of source code scripts. The external tool node failed - the input file generated from the data stream was not readible because of the "" signs Knime puts around the field content. Is it possible to run the source code within the JavaSnippet? Apparently, this node does not unterstand the package and the import sections.

Can anybody give me a hint how to deal with this (or find information how to deal with this?)


Thanks a lot,