When I use pivot on the index column and aggregation on column with the values. I get exactly one neverending row, entries not really identifiable anymore. Thus, something wrong here.
The GroupBy Node tells me, that the number of entries is too long ("Group contains too many values). I have to add, that the number of "entry" blocks is higher than 10,000! Thus, this high number might be a problem?
Ok, I realized, that the problem dimensions are too big. Therefore I reduced the dataset to have only one unique identifier index per entry and then did the compare too another dataset which was intended :-)