2021-12-22 20:46:16,247 : WARN : main : : Class : : : Requested 12 tokens but only received 4 tokens. Setting global thread pool to 8 2021-12-22 20:47:05,584 : WARN : pool-4-thread-1 : 6a63c5b8-687b-4a46-ac49-18c26cafd281 : SourceCodeTemplatesExtensions : ncbi : 0 : Could not find templates folder templates/ in plugin org.knime.knip.knimepython 2021-12-22 20:47:11,114 : WARN : KNIME-Worker-1-String Configuration 0:272 : 6a63c5b8-687b-4a46-ac49-18c26cafd281 : Node : Create Folder : 0:0:0:202 : Errors overwriting node settings with flow variables: Unknown variable "output_rel_location" 2021-12-22 20:47:11,116 : WARN : KNIME-Worker-1-String Configuration 0:272 : 6a63c5b8-687b-4a46-ac49-18c26cafd281 : Node : Create Folder : 0:0:0:200 : Errors overwriting node settings with flow variables: Unknown variable "output_nodes_location" 2021-12-22 20:47:12,757 : WARN : KNIME-Worker-4-Set Up 0:0 : 6a63c5b8-687b-4a46-ac49-18c26cafd281 : Node : File Reader : 0:185 : Errors overwriting node settings with flow variables: Unknown variable "Destination Path" 2021-12-22 20:47:12,759 : WARN : KNIME-Worker-4-Set Up 0:0 : 6a63c5b8-687b-4a46-ac49-18c26cafd281 : Node : File Reader : 0:208 : Errors overwriting node settings with flow variables: Unknown variable "Destination Path" 2021-12-22 20:47:12,760 : WARN : KNIME-Worker-4-Set Up 0:0 : 6a63c5b8-687b-4a46-ac49-18c26cafd281 : Node : File Reader : 0:223 : Errors overwriting node settings with flow variables: Unknown variable "Destination Path" 2021-12-22 20:47:12,761 : WARN : KNIME-Worker-4-Set Up 0:0 : 6a63c5b8-687b-4a46-ac49-18c26cafd281 : Node : File Reader : 0:6 : Errors overwriting node settings with flow variables: Unknown variable "Destination Path" 2021-12-22 20:47:19,165 : WARN : KNIME-Worker-4-Table Row to Variable 0:207 : 6a63c5b8-687b-4a46-ac49-18c26cafd281 : Node : File Reader : 0:208 : The node configuration changed and the table spec will be recalculated during execution. 2021-12-22 20:47:19,168 : WARN : KNIME-Worker-5-Table Row to Variable 0:222 : 6a63c5b8-687b-4a46-ac49-18c26cafd281 : Node : File Reader : 0:223 : The node configuration changed and the table spec will be recalculated during execution. 2021-12-22 20:47:19,171 : WARN : KNIME-Worker-6-Table Row to Variable 0:124 : 6a63c5b8-687b-4a46-ac49-18c26cafd281 : Node : File Reader : 0:6 : The node configuration changed and the table spec will be recalculated during execution. 2021-12-22 20:47:19,173 : WARN : KNIME-Worker-2-Table Row to Variable 0:184 : 6a63c5b8-687b-4a46-ac49-18c26cafd281 : Node : File Reader : 0:185 : The node configuration changed and the table spec will be recalculated during execution. 2021-12-22 20:48:19,064 : ERROR : KNIME-Worker-7-File Reader 0:208 : 6a63c5b8-687b-4a46-ac49-18c26cafd281 : Node : File Reader : 0:208 : Execute failed: Something went wrong during the parsing process. For further details please have a look into the log. java.io.IOException: Something went wrong during the parsing process. For further details please have a look into the log. at org.knime.base.node.io.filehandling.csv.reader.api.CSVTableReader$CsvRead.next(CSVTableReader.java:260) at org.knime.filehandling.core.node.table.reader.read.CheckSameSizeRead.next(CheckSameSizeRead.java:78) at org.knime.filehandling.core.node.table.reader.DefaultIndividualTableReader.fillOutputWithProgress(DefaultIndividualTableReader.java:142) at org.knime.filehandling.core.node.table.reader.DefaultIndividualTableReader.fillOutput(DefaultIndividualTableReader.java:121) at org.knime.filehandling.core.node.table.reader.DefaultMultiTableRead.fillRowOutput(DefaultMultiTableRead.java:135) at org.knime.filehandling.core.node.table.reader.MultiTableReader.fillRowOutput(MultiTableReader.java:90) at org.knime.filehandling.core.node.table.reader.MultiTableReader.readTable(MultiTableReader.java:173) at org.knime.filehandling.core.node.table.reader.TableReaderNodeModel.execute(TableReaderNodeModel.java:160) at org.knime.core.node.NodeModel.executeModel(NodeModel.java:549) at org.knime.core.node.Node.invokeFullyNodeModelExecute(Node.java:1267) at org.knime.core.node.Node.execute(Node.java:1041) at org.knime.core.node.workflow.NativeNodeContainer.performExecuteNode(NativeNodeContainer.java:559) at org.knime.core.node.exec.LocalNodeExecutionJob.mainExecute(LocalNodeExecutionJob.java:95) at org.knime.core.node.workflow.NodeExecutionJob.internalRun(NodeExecutionJob.java:201) at org.knime.core.node.workflow.NodeExecutionJob.run(NodeExecutionJob.java:117) at org.knime.core.util.ThreadUtils$RunnableWithContextImpl.runWithContext(ThreadUtils.java:365) at org.knime.core.util.ThreadUtils$RunnableWithContext.run(ThreadUtils.java:219) at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Unknown Source) at java.base/java.util.concurrent.FutureTask.run(Unknown Source) at org.knime.core.util.ThreadPool$MyFuture.run(ThreadPool.java:123) at org.knime.core.util.ThreadPool$Worker.run(ThreadPool.java:246) Suppressed: com.univocity.parsers.common.TextParsingException: java.io.IOException - Premature EOF Parser Configuration: CsvParserSettings: Auto configuration enabled=true Auto-closing enabled=true Autodetect column delimiter=false Autodetect quotes=false Column reordering enabled=true Delimiters for detection=null Empty value=null Escape unquoted values=false Header extraction enabled=null Headers=null Ignore leading whitespaces=true Ignore leading whitespaces in quotes=true Ignore trailing whitespaces=true Ignore trailing whitespaces in quotes=true Input buffer size=1048576 Input reading on separate thread=true Keep escape sequences=false Keep quotes=false Length of content displayed on error=-1 Line separator detection enabled=false Maximum number of characters per column=524288 Maximum number of columns=8192 Normalize escaped line separators=true Null value=null Number of records to read=all Processor=none Restricting data in exceptions=false RowProcessor error handler=null Selected fields=none Skip bits as whitespace=true Skip empty lines=true Unescaped quote handling=nullFormat configuration: CsvFormat: Comment character=# Field delimiter=\t Line separator (normalized)=\n Line separator sequence=\n Quote character=" Quote escape character=" Quote escape escape character=null Internal state when error was thrown: line=5511235, column=2, record=5511234, charIndex=197551204, headers=[7955, 30037, Ortholog, 7830, 119955596] at com.univocity.parsers.common.AbstractParser.handleException(AbstractParser.java:395) at com.univocity.parsers.common.AbstractParser.stopParsing(AbstractParser.java:451) at org.knime.base.node.io.filehandling.csv.reader.api.CSVTableReader$CsvRead.close(CSVTableReader.java:285) at org.knime.filehandling.core.node.table.reader.read.AbstractReadDecorator.close(AbstractReadDecorator.java:102) at org.knime.filehandling.core.node.table.reader.DefaultMultiTableRead.fillRowOutput(DefaultMultiTableRead.java:136) ... 16 more Caused by: java.io.IOException: Premature EOF at java.base/sun.net.www.http.ChunkedInputStream.fastRead(Unknown Source) at java.base/sun.net.www.http.ChunkedInputStream.read(Unknown Source) at java.base/java.io.FilterInputStream.read(Unknown Source) at java.base/sun.net.www.protocol.http.HttpURLConnection$HttpInputStream.read(Unknown Source) at com.knime.enterprise.client.rest.RestDownloadStream.read(RestDownloadStream.java:144) at org.knime.filehandling.core.connections.FSInputStream.read(FSInputStream.java:86) at com.google.common.io.CountingInputStream.read(CountingInputStream.java:62) at java.base/java.util.zip.InflaterInputStream.fill(Unknown Source) at java.base/java.util.zip.InflaterInputStream.read(Unknown Source) at java.base/java.util.zip.GZIPInputStream.read(Unknown Source) at org.knime.filehandling.core.util.CompressionAwareCountingInputStream.read(CompressionAwareCountingInputStream.java:143) at org.apache.commons.io.input.BOMInputStream.read(BOMInputStream.java:348) at java.base/sun.nio.cs.StreamDecoder.readBytes(Unknown Source) at java.base/sun.nio.cs.StreamDecoder.implRead(Unknown Source) at java.base/sun.nio.cs.StreamDecoder.read(Unknown Source) at java.base/java.io.InputStreamReader.read(Unknown Source) at org.knime.base.node.io.filehandling.csv.reader.OSIndependentNewLineReader.read(OSIndependentNewLineReader.java:85) at java.base/java.io.BufferedReader.read1(Unknown Source) at java.base/java.io.BufferedReader.read(Unknown Source) at com.univocity.parsers.common.input.concurrent.CharBucket.fill(CharBucket.java:70) at com.univocity.parsers.common.input.concurrent.ConcurrentCharLoader.readBucket(ConcurrentCharLoader.java:74) at com.univocity.parsers.common.input.concurrent.ConcurrentCharLoader.run(ConcurrentCharLoader.java:91) at java.base/java.lang.Thread.run(Unknown Source) Caused by: com.univocity.parsers.common.TextParsingException: java.io.IOException - Premature EOF Parser Configuration: CsvParserSettings: Auto configuration enabled=true Auto-closing enabled=true Autodetect column delimiter=false Autodetect quotes=false Column reordering enabled=true Delimiters for detection=null Empty value=null Escape unquoted values=false Header extraction enabled=null Headers=null Ignore leading whitespaces=true Ignore leading whitespaces in quotes=true Ignore trailing whitespaces=true Ignore trailing whitespaces in quotes=true Input buffer size=1048576 Input reading on separate thread=true Keep escape sequences=false Keep quotes=false Length of content displayed on error=-1 Line separator detection enabled=false Maximum number of characters per column=524288 Maximum number of columns=8192 Normalize escaped line separators=true Null value=null Number of records to read=all Processor=none Restricting data in exceptions=false RowProcessor error handler=null Selected fields=none Skip bits as whitespace=true Skip empty lines=true Unescaped quote handling=nullFormat configuration: CsvFormat: Comment character=# Field delimiter=\t Line separator (normalized)=\n Line separator sequence=\n Quote character=" Quote escape character=" Quote escape escape character=null Internal state when error was thrown: line=5511235, column=2, record=5511234, charIndex=197551204, headers=[7955, 30037, Ortholog, 7830, 119955596] at com.univocity.parsers.common.AbstractParser.handleException(AbstractParser.java:395) at com.univocity.parsers.common.AbstractParser.parseNext(AbstractParser.java:616) at org.knime.base.node.io.filehandling.csv.reader.api.CSVTableReader$CsvRead.next(CSVTableReader.java:239) ... 20 more Caused by: [CIRCULAR REFERENCE: java.io.IOException: Premature EOF] 2021-12-22 20:48:19,072 : WARN : KNIME-Worker-7-File Reader 0:208 : 6a63c5b8-687b-4a46-ac49-18c26cafd281 : Node : File Reader : 0:208 : The node configuration changed and the table spec will be recalculated during execution. 2021-12-22 20:48:21,652 : ERROR : KNIME-Worker-3-File Reader 0:223 : 6a63c5b8-687b-4a46-ac49-18c26cafd281 : Node : File Reader : 0:223 : Execute failed: Something went wrong during the parsing process. For further details please have a look into the log. java.io.IOException: Something went wrong during the parsing process. For further details please have a look into the log. at org.knime.base.node.io.filehandling.csv.reader.api.CSVTableReader$CsvRead.next(CSVTableReader.java:260) at org.knime.filehandling.core.node.table.reader.read.CheckSameSizeRead.next(CheckSameSizeRead.java:78) at org.knime.filehandling.core.node.table.reader.DefaultIndividualTableReader.fillOutputWithProgress(DefaultIndividualTableReader.java:142) at org.knime.filehandling.core.node.table.reader.DefaultIndividualTableReader.fillOutput(DefaultIndividualTableReader.java:121) at org.knime.filehandling.core.node.table.reader.DefaultMultiTableRead.fillRowOutput(DefaultMultiTableRead.java:135) at org.knime.filehandling.core.node.table.reader.MultiTableReader.fillRowOutput(MultiTableReader.java:90) at org.knime.filehandling.core.node.table.reader.MultiTableReader.readTable(MultiTableReader.java:173) at org.knime.filehandling.core.node.table.reader.TableReaderNodeModel.execute(TableReaderNodeModel.java:160) at org.knime.core.node.NodeModel.executeModel(NodeModel.java:549) at org.knime.core.node.Node.invokeFullyNodeModelExecute(Node.java:1267) at org.knime.core.node.Node.execute(Node.java:1041) at org.knime.core.node.workflow.NativeNodeContainer.performExecuteNode(NativeNodeContainer.java:559) at org.knime.core.node.exec.LocalNodeExecutionJob.mainExecute(LocalNodeExecutionJob.java:95) at org.knime.core.node.workflow.NodeExecutionJob.internalRun(NodeExecutionJob.java:201) at org.knime.core.node.workflow.NodeExecutionJob.run(NodeExecutionJob.java:117) at org.knime.core.util.ThreadUtils$RunnableWithContextImpl.runWithContext(ThreadUtils.java:365) at org.knime.core.util.ThreadUtils$RunnableWithContext.run(ThreadUtils.java:219) at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Unknown Source) at java.base/java.util.concurrent.FutureTask.run(Unknown Source) at org.knime.core.util.ThreadPool$MyFuture.run(ThreadPool.java:123) at org.knime.core.util.ThreadPool$Worker.run(ThreadPool.java:246) Suppressed: com.univocity.parsers.common.TextParsingException: java.io.IOException - Premature EOF Parser Configuration: CsvParserSettings: Auto configuration enabled=true Auto-closing enabled=true Autodetect column delimiter=false Autodetect quotes=false Column reordering enabled=true Delimiters for detection=null Empty value=null Escape unquoted values=false Header extraction enabled=null Headers=null Ignore leading whitespaces=true Ignore leading whitespaces in quotes=true Ignore trailing whitespaces=true Ignore trailing whitespaces in quotes=true Input buffer size=1048576 Input reading on separate thread=true Keep escape sequences=false Keep quotes=false Length of content displayed on error=-1 Line separator detection enabled=false Maximum number of characters per column=524288 Maximum number of columns=8192 Normalize escaped line separators=true Null value=null Number of records to read=all Processor=none Restricting data in exceptions=false RowProcessor error handler=null Selected fields=none Skip bits as whitespace=true Skip empty lines=true Unescaped quote handling=nullFormat configuration: CsvFormat: Comment character=# Field delimiter=\t Line separator (normalized)=\n Line separator sequence=\n Quote character=" Quote escape character=" Quote escape escape character=null Internal state when error was thrown: line=6068155, column=2, record=6068154, charIndex=231700489, headers=[9, -, 1246494, repA1, 20031113] at com.univocity.parsers.common.AbstractParser.handleException(AbstractParser.java:395) at com.univocity.parsers.common.AbstractParser.stopParsing(AbstractParser.java:451) at org.knime.base.node.io.filehandling.csv.reader.api.CSVTableReader$CsvRead.close(CSVTableReader.java:285) at org.knime.filehandling.core.node.table.reader.read.AbstractReadDecorator.close(AbstractReadDecorator.java:102) at org.knime.filehandling.core.node.table.reader.DefaultMultiTableRead.fillRowOutput(DefaultMultiTableRead.java:136) ... 16 more Caused by: java.io.IOException: Premature EOF at java.base/sun.net.www.http.ChunkedInputStream.fastRead(Unknown Source) at java.base/sun.net.www.http.ChunkedInputStream.read(Unknown Source) at java.base/java.io.FilterInputStream.read(Unknown Source) at java.base/sun.net.www.protocol.http.HttpURLConnection$HttpInputStream.read(Unknown Source) at com.knime.enterprise.client.rest.RestDownloadStream.read(RestDownloadStream.java:144) at org.knime.filehandling.core.connections.FSInputStream.read(FSInputStream.java:86) at com.google.common.io.CountingInputStream.read(CountingInputStream.java:62) at java.base/java.util.zip.InflaterInputStream.fill(Unknown Source) at java.base/java.util.zip.InflaterInputStream.read(Unknown Source) at java.base/java.util.zip.GZIPInputStream.read(Unknown Source) at org.knime.filehandling.core.util.CompressionAwareCountingInputStream.read(CompressionAwareCountingInputStream.java:143) at org.apache.commons.io.input.BOMInputStream.read(BOMInputStream.java:348) at java.base/sun.nio.cs.StreamDecoder.readBytes(Unknown Source) at java.base/sun.nio.cs.StreamDecoder.implRead(Unknown Source) at java.base/sun.nio.cs.StreamDecoder.read(Unknown Source) at java.base/java.io.InputStreamReader.read(Unknown Source) at org.knime.base.node.io.filehandling.csv.reader.OSIndependentNewLineReader.read(OSIndependentNewLineReader.java:85) at java.base/java.io.BufferedReader.read1(Unknown Source) at java.base/java.io.BufferedReader.read(Unknown Source) at com.univocity.parsers.common.input.concurrent.CharBucket.fill(CharBucket.java:70) at com.univocity.parsers.common.input.concurrent.ConcurrentCharLoader.readBucket(ConcurrentCharLoader.java:74) at com.univocity.parsers.common.input.concurrent.ConcurrentCharLoader.run(ConcurrentCharLoader.java:91) at java.base/java.lang.Thread.run(Unknown Source) Caused by: com.univocity.parsers.common.TextParsingException: java.io.IOException - Premature EOF Parser Configuration: CsvParserSettings: Auto configuration enabled=true Auto-closing enabled=true Autodetect column delimiter=false Autodetect quotes=false Column reordering enabled=true Delimiters for detection=null Empty value=null Escape unquoted values=false Header extraction enabled=null Headers=null Ignore leading whitespaces=true Ignore leading whitespaces in quotes=true Ignore trailing whitespaces=true Ignore trailing whitespaces in quotes=true Input buffer size=1048576 Input reading on separate thread=true Keep escape sequences=false Keep quotes=false Length of content displayed on error=-1 Line separator detection enabled=false Maximum number of characters per column=524288 Maximum number of columns=8192 Normalize escaped line separators=true Null value=null Number of records to read=all Processor=none Restricting data in exceptions=false RowProcessor error handler=null Selected fields=none Skip bits as whitespace=true Skip empty lines=true Unescaped quote handling=nullFormat configuration: CsvFormat: Comment character=# Field delimiter=\t Line separator (normalized)=\n Line separator sequence=\n Quote character=" Quote escape character=" Quote escape escape character=null Internal state when error was thrown: line=6068155, column=2, record=6068154, charIndex=231700489, headers=[9, -, 1246494, repA1, 20031113], content parsed=609 at com.univocity.parsers.common.AbstractParser.handleException(AbstractParser.java:395) at com.univocity.parsers.common.AbstractParser.parseNext(AbstractParser.java:616) at org.knime.base.node.io.filehandling.csv.reader.api.CSVTableReader$CsvRead.next(CSVTableReader.java:239) ... 20 more Caused by: [CIRCULAR REFERENCE: java.io.IOException: Premature EOF] 2021-12-22 20:48:21,658 : WARN : KNIME-Worker-3-File Reader 0:223 : 6a63c5b8-687b-4a46-ac49-18c26cafd281 : Node : File Reader : 0:223 : The node configuration changed and the table spec will be recalculated during execution. 2021-12-22 20:48:22,827 : ERROR : KNIME-Worker-4-File Reader 0:185 : 6a63c5b8-687b-4a46-ac49-18c26cafd281 : Node : File Reader : 0:185 : Execute failed: Something went wrong during the parsing process. For further details please have a look into the log. java.io.IOException: Something went wrong during the parsing process. For further details please have a look into the log. at org.knime.base.node.io.filehandling.csv.reader.api.CSVTableReader$CsvRead.next(CSVTableReader.java:260) at org.knime.filehandling.core.node.table.reader.read.CheckSameSizeRead.next(CheckSameSizeRead.java:78) at org.knime.filehandling.core.node.table.reader.read.SkipIdxRead.next(SkipIdxRead.java:85) at org.knime.filehandling.core.node.table.reader.DefaultIndividualTableReader.fillOutputWithProgress(DefaultIndividualTableReader.java:142) at org.knime.filehandling.core.node.table.reader.DefaultIndividualTableReader.fillOutput(DefaultIndividualTableReader.java:121) at org.knime.filehandling.core.node.table.reader.DefaultMultiTableRead.fillRowOutput(DefaultMultiTableRead.java:135) at org.knime.filehandling.core.node.table.reader.MultiTableReader.fillRowOutput(MultiTableReader.java:90) at org.knime.filehandling.core.node.table.reader.MultiTableReader.readTable(MultiTableReader.java:173) at org.knime.filehandling.core.node.table.reader.TableReaderNodeModel.execute(TableReaderNodeModel.java:160) at org.knime.core.node.NodeModel.executeModel(NodeModel.java:549) at org.knime.core.node.Node.invokeFullyNodeModelExecute(Node.java:1267) at org.knime.core.node.Node.execute(Node.java:1041) at org.knime.core.node.workflow.NativeNodeContainer.performExecuteNode(NativeNodeContainer.java:559) at org.knime.core.node.exec.LocalNodeExecutionJob.mainExecute(LocalNodeExecutionJob.java:95) at org.knime.core.node.workflow.NodeExecutionJob.internalRun(NodeExecutionJob.java:201) at org.knime.core.node.workflow.NodeExecutionJob.run(NodeExecutionJob.java:117) at org.knime.core.util.ThreadUtils$RunnableWithContextImpl.runWithContext(ThreadUtils.java:365) at org.knime.core.util.ThreadUtils$RunnableWithContext.run(ThreadUtils.java:219) at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Unknown Source) at java.base/java.util.concurrent.FutureTask.run(Unknown Source) at org.knime.core.util.ThreadPool$MyFuture.run(ThreadPool.java:123) at org.knime.core.util.ThreadPool$Worker.run(ThreadPool.java:246) Suppressed: com.univocity.parsers.common.TextParsingException: java.io.IOException - Premature EOF Parser Configuration: CsvParserSettings: Auto configuration enabled=true Auto-closing enabled=true Autodetect column delimiter=false Autodetect quotes=false Column reordering enabled=true Delimiters for detection=null Empty value=null Escape unquoted values=false Header extraction enabled=null Headers=null Ignore leading whitespaces=true Ignore leading whitespaces in quotes=true Ignore trailing whitespaces=true Ignore trailing whitespaces in quotes=true Input buffer size=1048576 Input reading on separate thread=true Keep escape sequences=false Keep quotes=false Length of content displayed on error=-1 Line separator detection enabled=false Maximum number of characters per column=524288 Maximum number of columns=8192 Normalize escaped line separators=true Null value=null Number of records to read=all Processor=none Restricting data in exceptions=false RowProcessor error handler=null Selected fields=none Skip bits as whitespace=true Skip empty lines=true Unescaped quote handling=nullFormat configuration: CsvFormat: Comment character=\0 Field delimiter=\t Line separator (normalized)=\n Line separator sequence=\n Quote character=" Quote escape character=" Quote escape escape character=null Internal state when error was thrown: line=4346493, column=3, record=4346493, charIndex=424835991, headers=[#tax_id, GeneID, Ensembl_gene_identifier, RNA_nucleotide_accession.version, Ensembl_rna_identifier, protein_accession.version, Ensembl_protein_identifier] at com.univocity.parsers.common.AbstractParser.handleException(AbstractParser.java:395) at com.univocity.parsers.common.AbstractParser.stopParsing(AbstractParser.java:451) at org.knime.base.node.io.filehandling.csv.reader.api.CSVTableReader$CsvRead.close(CSVTableReader.java:285) at org.knime.filehandling.core.node.table.reader.read.AbstractReadDecorator.close(AbstractReadDecorator.java:102) at org.knime.filehandling.core.node.table.reader.read.AbstractReadDecorator.close(AbstractReadDecorator.java:102) at org.knime.filehandling.core.node.table.reader.DefaultMultiTableRead.fillRowOutput(DefaultMultiTableRead.java:136) ... 16 more Caused by: java.io.IOException: Premature EOF at java.base/sun.net.www.http.ChunkedInputStream.fastRead(Unknown Source) at java.base/sun.net.www.http.ChunkedInputStream.read(Unknown Source) at java.base/java.io.FilterInputStream.read(Unknown Source) at java.base/sun.net.www.protocol.http.HttpURLConnection$HttpInputStream.read(Unknown Source) at com.knime.enterprise.client.rest.RestDownloadStream.read(RestDownloadStream.java:144) at org.knime.filehandling.core.connections.FSInputStream.read(FSInputStream.java:86) at com.google.common.io.CountingInputStream.read(CountingInputStream.java:62) at java.base/java.util.zip.InflaterInputStream.fill(Unknown Source) at java.base/java.util.zip.InflaterInputStream.read(Unknown Source) at java.base/java.util.zip.GZIPInputStream.read(Unknown Source) at org.knime.filehandling.core.util.CompressionAwareCountingInputStream.read(CompressionAwareCountingInputStream.java:143) at org.apache.commons.io.input.BOMInputStream.read(BOMInputStream.java:348) at java.base/sun.nio.cs.StreamDecoder.readBytes(Unknown Source) at java.base/sun.nio.cs.StreamDecoder.implRead(Unknown Source) at java.base/sun.nio.cs.StreamDecoder.read(Unknown Source) at java.base/java.io.InputStreamReader.read(Unknown Source) at org.knime.base.node.io.filehandling.csv.reader.OSIndependentNewLineReader.read(OSIndependentNewLineReader.java:85) at java.base/java.io.BufferedReader.read1(Unknown Source) at java.base/java.io.BufferedReader.read(Unknown Source) at com.univocity.parsers.common.input.concurrent.CharBucket.fill(CharBucket.java:70) at com.univocity.parsers.common.input.concurrent.ConcurrentCharLoader.readBucket(ConcurrentCharLoader.java:74) at com.univocity.parsers.common.input.concurrent.ConcurrentCharLoader.run(ConcurrentCharLoader.java:91) at java.base/java.lang.Thread.run(Unknown Source) Caused by: com.univocity.parsers.common.TextParsingException: java.io.IOException - Premature EOF Parser Configuration: CsvParserSettings: Auto configuration enabled=true Auto-closing enabled=true Autodetect column delimiter=false Autodetect quotes=false Column reordering enabled=true Delimiters for detection=null Empty value=null Escape unquoted values=false Header extraction enabled=null Headers=null Ignore leading whitespaces=true Ignore leading whitespaces in quotes=true Ignore trailing whitespaces=true Ignore trailing whitespaces in quotes=true Input buffer size=1048576 Input reading on separate thread=true Keep escape sequences=false Keep quotes=false Length of content displayed on error=-1 Line separator detection enabled=false Maximum number of characters per column=524288 Maximum number of columns=8192 Normalize escaped line separators=true Null value=null Number of records to read=all Processor=none Restricting data in exceptions=false RowProcessor error handler=null Selected fields=none Skip bits as whitespace=true Skip empty lines=true Unescaped quote handling=nullFormat configuration: CsvFormat: Comment character=\0 Field delimiter=\t Line separator (normalized)=\n Line separator sequence=\n Quote character=" Quote escape character=" Quote escape escape character=null Internal state when error was thrown: line=4346493, column=3, record=4346493, charIndex=424835991, headers=[#tax_id, GeneID, Ensembl_gene_identifier, RNA_nucleotide_accession.version, Ensembl_rna_identifier, protein_accession.version, Ensembl_protein_identifier], content parsed=XM_0272778 at com.univocity.parsers.common.AbstractParser.handleException(AbstractParser.java:395) at com.univocity.parsers.common.AbstractParser.parseNext(AbstractParser.java:616) at org.knime.base.node.io.filehandling.csv.reader.api.CSVTableReader$CsvRead.next(CSVTableReader.java:239) ... 21 more Caused by: [CIRCULAR REFERENCE: java.io.IOException: Premature EOF] 2021-12-22 20:48:22,832 : WARN : KNIME-Worker-4-File Reader 0:185 : 6a63c5b8-687b-4a46-ac49-18c26cafd281 : Node : File Reader : 0:185 : The node configuration changed and the table spec will be recalculated during execution. 2021-12-22 20:48:39,802 : ERROR : KNIME-Worker-1-File Reader 0:6 : 6a63c5b8-687b-4a46-ac49-18c26cafd281 : Node : File Reader : 0:6 : Execute failed: Something went wrong during the parsing process. For further details please have a look into the log. java.io.IOException: Something went wrong during the parsing process. For further details please have a look into the log. at org.knime.base.node.io.filehandling.csv.reader.api.CSVTableReader$CsvRead.next(CSVTableReader.java:260) at org.knime.filehandling.core.node.table.reader.read.CheckSameSizeRead.next(CheckSameSizeRead.java:78) at org.knime.filehandling.core.node.table.reader.read.SkipIdxRead.next(SkipIdxRead.java:85) at org.knime.filehandling.core.node.table.reader.DefaultIndividualTableReader.fillOutputWithProgress(DefaultIndividualTableReader.java:142) at org.knime.filehandling.core.node.table.reader.DefaultIndividualTableReader.fillOutput(DefaultIndividualTableReader.java:121) at org.knime.filehandling.core.node.table.reader.DefaultMultiTableRead.fillRowOutput(DefaultMultiTableRead.java:135) at org.knime.filehandling.core.node.table.reader.MultiTableReader.fillRowOutput(MultiTableReader.java:90) at org.knime.filehandling.core.node.table.reader.MultiTableReader.readTable(MultiTableReader.java:173) at org.knime.filehandling.core.node.table.reader.TableReaderNodeModel.execute(TableReaderNodeModel.java:160) at org.knime.core.node.NodeModel.executeModel(NodeModel.java:549) at org.knime.core.node.Node.invokeFullyNodeModelExecute(Node.java:1267) at org.knime.core.node.Node.execute(Node.java:1041) at org.knime.core.node.workflow.NativeNodeContainer.performExecuteNode(NativeNodeContainer.java:559) at org.knime.core.node.exec.LocalNodeExecutionJob.mainExecute(LocalNodeExecutionJob.java:95) at org.knime.core.node.workflow.NodeExecutionJob.internalRun(NodeExecutionJob.java:201) at org.knime.core.node.workflow.NodeExecutionJob.run(NodeExecutionJob.java:117) at org.knime.core.util.ThreadUtils$RunnableWithContextImpl.runWithContext(ThreadUtils.java:365) at org.knime.core.util.ThreadUtils$RunnableWithContext.run(ThreadUtils.java:219) at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Unknown Source) at java.base/java.util.concurrent.FutureTask.run(Unknown Source) at org.knime.core.util.ThreadPool$MyFuture.run(ThreadPool.java:123) at org.knime.core.util.ThreadPool$Worker.run(ThreadPool.java:246) Suppressed: com.univocity.parsers.common.TextParsingException: java.io.IOException - Premature EOF Parser Configuration: CsvParserSettings: Auto configuration enabled=true Auto-closing enabled=true Autodetect column delimiter=false Autodetect quotes=false Column reordering enabled=true Delimiters for detection=null Empty value=null Escape unquoted values=false Header extraction enabled=null Headers=null Ignore leading whitespaces=true Ignore leading whitespaces in quotes=true Ignore trailing whitespaces=true Ignore trailing whitespaces in quotes=true Input buffer size=1048576 Input reading on separate thread=true Keep escape sequences=false Keep quotes=false Length of content displayed on error=-1 Line separator detection enabled=false Maximum number of characters per column=524288 Maximum number of columns=8192 Normalize escaped line separators=true Null value=null Number of records to read=all Processor=none Restricting data in exceptions=false RowProcessor error handler=null Selected fields=none Skip bits as whitespace=true Skip empty lines=true Unescaped quote handling=nullFormat configuration: CsvFormat: Comment character=\0 Field delimiter=\t Line separator (normalized)=\n Line separator sequence=\n Quote character=" Quote escape character=" Quote escape escape character=null Internal state when error was thrown: line=6481873, column=2, record=6481873, charIndex=935935466, headers=[#tax_id, GeneID, Symbol, LocusTag, Synonyms, dbXrefs, chromosome, map_location, description, type_of_gene, Symbol_from_nomenclature_authority, Full_name_from_nomenclature_authority, Nomenclature_status, Other_designations, Modification_date, Feature_type] at com.univocity.parsers.common.AbstractParser.handleException(AbstractParser.java:395) at com.univocity.parsers.common.AbstractParser.stopParsing(AbstractParser.java:451) at org.knime.base.node.io.filehandling.csv.reader.api.CSVTableReader$CsvRead.close(CSVTableReader.java:285) at org.knime.filehandling.core.node.table.reader.read.AbstractReadDecorator.close(AbstractReadDecorator.java:102) at org.knime.filehandling.core.node.table.reader.read.AbstractReadDecorator.close(AbstractReadDecorator.java:102) at org.knime.filehandling.core.node.table.reader.DefaultMultiTableRead.fillRowOutput(DefaultMultiTableRead.java:136) ... 16 more Caused by: java.io.IOException: Premature EOF at java.base/sun.net.www.http.ChunkedInputStream.fastRead(Unknown Source) at java.base/sun.net.www.http.ChunkedInputStream.read(Unknown Source) at java.base/java.io.FilterInputStream.read(Unknown Source) at java.base/sun.net.www.protocol.http.HttpURLConnection$HttpInputStream.read(Unknown Source) at com.knime.enterprise.client.rest.RestDownloadStream.read(RestDownloadStream.java:144) at org.knime.filehandling.core.connections.FSInputStream.read(FSInputStream.java:86) at com.google.common.io.CountingInputStream.read(CountingInputStream.java:62) at java.base/java.util.zip.InflaterInputStream.fill(Unknown Source) at java.base/java.util.zip.InflaterInputStream.read(Unknown Source) at java.base/java.util.zip.GZIPInputStream.read(Unknown Source) at org.knime.filehandling.core.util.CompressionAwareCountingInputStream.read(CompressionAwareCountingInputStream.java:143) at org.apache.commons.io.input.BOMInputStream.read(BOMInputStream.java:348) at java.base/sun.nio.cs.StreamDecoder.readBytes(Unknown Source) at java.base/sun.nio.cs.StreamDecoder.implRead(Unknown Source) at java.base/sun.nio.cs.StreamDecoder.read(Unknown Source) at java.base/java.io.InputStreamReader.read(Unknown Source) at org.knime.base.node.io.filehandling.csv.reader.OSIndependentNewLineReader.read(OSIndependentNewLineReader.java:85) at java.base/java.io.BufferedReader.read1(Unknown Source) at java.base/java.io.BufferedReader.read(Unknown Source) at com.univocity.parsers.common.input.concurrent.CharBucket.fill(CharBucket.java:70) at com.univocity.parsers.common.input.concurrent.ConcurrentCharLoader.readBucket(ConcurrentCharLoader.java:74) at com.univocity.parsers.common.input.concurrent.ConcurrentCharLoader.run(ConcurrentCharLoader.java:91) at java.base/java.lang.Thread.run(Unknown Source) Caused by: com.univocity.parsers.common.TextParsingException: java.io.IOException - Premature EOF Parser Configuration: CsvParserSettings: Auto configuration enabled=true Auto-closing enabled=true Autodetect column delimiter=false Autodetect quotes=false Column reordering enabled=true Delimiters for detection=null Empty value=null Escape unquoted values=false Header extraction enabled=null Headers=null Ignore leading whitespaces=true Ignore leading whitespaces in quotes=true Ignore trailing whitespaces=true Ignore trailing whitespaces in quotes=true Input buffer size=1048576 Input reading on separate thread=true Keep escape sequences=false Keep quotes=false Length of content displayed on error=-1 Line separator detection enabled=false Maximum number of characters per column=524288 Maximum number of columns=8192 Normalize escaped line separators=true Null value=null Number of records to read=all Processor=none Restricting data in exceptions=false RowProcessor error handler=null Selected fields=none Skip bits as whitespace=true Skip empty lines=true Unescaped quote handling=nullFormat configuration: CsvFormat: Comment character=\0 Field delimiter=\t Line separator (normalized)=\n Line separator sequence=\n Quote character=" Quote escape character=" Quote escape escape character=null Internal state when error was thrown: line=6481873, column=2, record=6481873, charIndex=935935466, headers=[#tax_id, GeneID, Symbol, LocusTag, Synonyms, dbXrefs, chromosome, map_location, description, type_of_gene, Symbol_from_nomenclature_authority, Full_name_from_nomenclature_authority, Nomenclature_status, Other_designations, Modification_date, Feature_type], content parsed=ube2 at com.univocity.parsers.common.AbstractParser.handleException(AbstractParser.java:395) at com.univocity.parsers.common.AbstractParser.parseNext(AbstractParser.java:616) at org.knime.base.node.io.filehandling.csv.reader.api.CSVTableReader$CsvRead.next(CSVTableReader.java:239) ... 21 more Caused by: [CIRCULAR REFERENCE: java.io.IOException: Premature EOF] 2021-12-22 20:48:39,816 : WARN : KNIME-Worker-1-File Reader 0:6 : 6a63c5b8-687b-4a46-ac49-18c26cafd281 : Node : File Reader : 0:6 : The node configuration changed and the table spec will be recalculated during execution.