I found an old ticket fitting the description (AP-11062) and attached this topic to it.
Unfortunately, the ticket is still open and it seems we are unsure what exactly removes the blob file temp directory. The path that gets printed is just a concatenation of the program path (path to installation dir) and the relative path of the blob file.
I cannot spot anything interesting in the thread dump, unfortunately. It is also mostly useful to identify issues if something is deadlocked or appears to be stuck. In cases like this, the knime.log or hints to reproduce are more helpful. But I guess this does occur so rarely, that it is hard to reproduce.
The issue appeared again but this time with the save routine as well.
I tried resetting and regenerating the data a few times but to no avail:
Log excerpt
2024-12-19 20:34:14,220 ERROR String Splitter (Regex) 3:1577:0:1945 Error sorting table: Blob file location "C:\Program Files\knime_5.3.0\col_28\000\000" does not exist
2024-12-19 20:34:21,017 ERROR String Splitter (Regex) 3:1577:0:1945 Error sorting table: Blob file location "C:\Program Files\knime_5.3.0\col_28\000\000" does not exist
2024-12-19 20:34:29,092 WARN String Splitter (Regex) 3:1577:0:1945 Some input string(s) were missing or did not match the pattern.
2024-12-19 20:34:34,923 ERROR String Splitter (Regex) 3:1577:0:1945 Error sorting table: Blob file location "C:\Program Files\knime_5.3.0\col_28\000\000" does not exist
2024-12-19 20:35:08,143 ERROR DefaultNodeService Invalid node settings: Invalid Pattern: gad_source=(?<gad_source>[^\&]+): named capturing group is missing trailing '>' near index 17
gad_source=(?<gad_source>[^\&]+)
^
2024-12-19 20:35:17,666 WARN String Splitter (Regex) 3:1577:0:1946 Some input string(s) were missing or did not match the pattern.
2024-12-19 20:35:22,866 ERROR String Splitter (Regex) 3:1577:0:1946 Error sorting table: Blob file location "C:\Program Files\knime_5.3.0\col_28\000\000" does not exist
2024-12-19 20:35:30,821 WARN String Splitter (Regex) 3:1577:0:1945 Some input string(s) were missing or did not match the pattern.
2024-12-19 20:35:30,848 WARN String Splitter (Regex) 3:1577:0:1946 Some input string(s) were missing or did not match the pattern.
2024-12-19 20:35:41,461 ERROR String Splitter (Regex) 3:1577:0:1946 Error sorting table: Blob file location "C:\Program Files\knime_5.3.0\col_28\000\000" does not exist
2024-12-19 20:36:10,875 ERROR InplaceSaveRunnable Could not save workflow - this exception will be re-thrown as an InterruptedException.
2024-12-19 20:36:10,885 ERROR WorkflowEditor Could not save workflow: Could not save workflow: Error while writing to buffer: Blob file location "C:\Program Files\knime_5.3.0\col_28\000\000" does not exist