I'm using
KNIME version 2.6.3 (Ubuntu 12.04 64bit) with Tripos 2.4 nodes.
I'm trying to use 2D Alignment from an SLN column and an SNL Sketch.
When I have connected the two input ports to the 2D Align node, the node turns yellow, but as soon as I click on Configure, KNIME crashes with an hs_err_pid....file.
Am I doing something wrong?
Here's a snippet of the dump.
Any help appreciated...
Christof
-----------------------------------
Dr. Christof Gaenzler
TIBCO Spotfire
cgaenzle (at) tibco.com
#
# A fatal error has been detected by the Java Runtime Environment:
#
# SIGSEGV (0xb) at pc=0x00007f5cac0e72c6, pid=11317, tid=140036077684480
#
# JRE version: 6.0_22-b04
# Java VM: Java HotSpot(TM) 64-Bit Server VM (17.1-b03 mixed mode linux-amd64 )
# Problematic frame:
# C [libjCt.so+0x502c6]
[..]
--------------- T H R E A D ---------------
Current thread (0x00007f5d4c89b000): JavaThread "KNIME-Worker-0" daemon [_thread_in_native, id=11431, stack(0x00007f5cb09a8000,0x00007f5cb0aa9000)]
siginfo:si_signo=SIGSEGV: si_errno=0, si_code=2 (SEGV_ACCERR), si_addr=0x00007f5d52e83a20
[..]
Stack: [0x00007f5cb09a8000,0x00007f5cb0aa9000], sp=0x00007f5cb0aa7180, free space=3fc0000000000000018k
Native frames: (J=compiled Java code, j=interpreted, Vv=VM code, C=native code)
C [libjCt.so+0x502c6]
C [libjCt.so+0x50186] DB_PP_UTL_ALIGN2D_START+0x22
C [libjCt.so+0x4c589] alignCT+0x1f
C [libjCt.so+0x4fccd] Java_com_tripos_common_ct_jCt_align+0xa7
j com.tripos.common.ct.jCt.align(JLjava/lang/String;I)I+0
j com.tripos.common.ct.Ct.align(Ljava/lang/String;I)I+6
j com.tripos.knime.plugin.align.Align2DNodeModel.execute([Lorg/knime/core/node/BufferedDataTable;Lorg/knime/core/node/ExecutionContext;)[Lorg/knime/core/node/BufferedDataTable;+452
j org.knime.core.node.NodeModel.execute([Lorg/knime/core/node/port/PortObject;Lorg/knime/core/node/ExecutionContext;)[Lorg/knime/core/node/port/PortObject;+85
j org.knime.core.node.NodeModel.executeModel([Lorg/knime/core/node/port/PortObject;Lorg/knime/core/node/ExecutionContext;)[Lorg/knime/core/node/port/PortObject;+223
j org.knime.core.node.Node.invokeNodeModelExecute(Lorg/knime/core/node/ExecutionContext;[Lorg/knime/core/node/port/PortObject;)[Lorg/knime/core/node/port/PortObject;+6
j org.knime.core.node.Node.execute([Lorg/knime/core/node/port/PortObject;Lorg/knime/core/node/ExecutionContext;)Z+389
j org.knime.core.node.workflow.SingleNodeContainer.performExecuteNode([Lorg/knime/core/node/port/PortObject;)Lorg/knime/core/node/workflow/execresult/NodeContainerExecutionStatus;+87
j org.knime.core.node.exec.LocalNodeExecutionJob.mainExecute()Lorg/knime/core/node/workflow/execresult/NodeContainerExecutionStatus;+13
j org.knime.core.node.workflow.NodeExecutionJob.run()V+223
j java.util.concurrent.Executors$RunnableAdapter.call()Ljava/lang/Object;+4
j java.util.concurrent.FutureTask$Sync.innerRun()V+30
j java.util.concurrent.FutureTask.run()V+4
j org.knime.core.util.ThreadPool$MyFuture.run()V+8
j org.knime.core.util.ThreadPool$Worker.run()V+55
v ~StubRoutines::call_stub
V [libjvm.so+0x3e75fd]
V [libjvm.so+0x5f6fe9]
V [libjvm.so+0x3e6ec9]
V [libjvm.so+0x3e6f7b]
V [libjvm.so+0x476417]
V [libjvm.so+0x6ee4e2]
V [libjvm.so+0x5f816f]