Creating 3D structures for Charged Compounds

I’m trying to create 3D structures with the Generate Coordinates node from a library of ~2m compounds, however around 200,000 of them fail, giving me the error ‘MolSanitizeException’. After going through the failed compounds and trying some custom compounds, I think the problem is compounds with charges. image. These charges can’t be removed by simply adding or removing hydrogens. Is there a way to ignore this error and still generate 3D structures with the charges?

Thanks
Clinton