DrugBank Network Analysis

The workflow analyses data from DrugBank (http://www.drugbank.ca/) a public available db that combines detailed drug (i.e. chemical, pharmacological and pharmaceutical) data with comprehensive drug target (i.e. sequence, structure, and pathway) information. Each drug is described by a drug card with more than 150 data fields of which only some are used in this workflow for demonstration. All necessary files are available at www.drugbank.ca/downloads The workflow requieres at least 2GB of main memory during execution (for details see the Requirements annotation)

This is a companion discussion topic for the original entry at https://kni.me/w/JNS7ze7QQ97lFk-9

Thanks for developing and sharing such a complex workflow. I may find it useful, so I have tried to use the workflow using DrugBank release version 5.1.8. The XML reader is failed to read the file with the failed notification; Java heap space. I have tried all the solutions listed in the net but none of them worked. Also while I am opening the workflow, the following message is popping up: Find missing extensions has encountered a problem. An internal error occurred during: “Finding missing extensions”. I have tried all the suggested ways available on the web. Can someone share some suggestions?