I’d like to create a work flow to extract both molecules and tables containing the corresponding IC50s from a patent. I’m very new at Knime so very sorry if this is trivial.
- How do I extract the example numbers? I’m able to extract the molecules but not the corresponding example number from the patent. I tried both SDF file reader (sdf generated from Scifinder) and File reader (sureCHEMBL for the csv).
- How do you extract a table of data from a patent? Columns: example #, IC50 target A, IC50 target B. I try to use the PDF with the PDF reader. The output is not great. I need more guidance please.
- I want to create a table that would have the molecule (image) and both IC50s. I guess I would use a joiner.
Thanks a lot for your assistance!