I’m trying to use
FASTA Sequence Extractor (downstream from
Load Text Files, which gets a file name from
String Input) to read a Uniprot database. It seems to be running fine, except it never finishes. The progress meter at the bottom of the (KNIME) node reaches 99% and then stays there indefinitely. It doesn’t produce an error or anything else. I definitely see CPU activity and RAM usage coming from KNIME but there is no indication that
FASTA Sequence Extractor will ever finish. As I write this, it has been stalled at 99% for over 15 minutes in the latest run; it took less than 1 minute to get to 99%.
On a similar note, is SWISS-PROT the best option to select for a Uniprot database? I don’t see Uniprot as an option in here.
Vernalis 1.17.3.v201808160901, KNIME 3.6.1 64bit Windows