Filtering 2D

Hello, I’m having troubles converting a set of molecules from 3D to 2D, just before this happens my dataset has nearly 8k compounds, the 2D Coordinates node filtered 1k compounds and I don’t know why, the structures are just fine, any ideas on what is happening?


Hey @Josueok01,

Welcome to the community!

Are you able to post your workflow here? It is hard to say why the filtering may be occurring. It could be related to conversion and the 2D node cannot properly port over all of the molecules which is why that may be occurring.

You may need to regenerate them to 2D based on your data, here is a thread that is related to rendering molecules to 2D from 3D:

Hope this helps,

1 Like