I'm trying to use a ImageJ.1x plugin via KNIP's IMageJ1 macro node. I'm mostly interested in the Results Table from this macro (not the image output). When I do run the KNIP ImageJ1 Macro node it executes fine but I'm not getting the output from the results table. There isn't much in the KNIME log (even under DEBUG mode).
In the KNIP ImageJ Macro node, I selected "Pure Code" and added the following:
run("Set Scale...", "distance=0 known=0 pixel=1 unit=pixel global");
run("Find Maxima...", "noise=500 output=[Point Selection]");
run("GaussFit OnSpot", "shape=Circle fitmode=[Levenberg Marquard] rectangle=4 pixel=100 max=500 cpcf=1 base=0");
About ImageJ Plugin:
The plugin I'm using is from the following URL. This plugin does a 2D Gaussian fitting of diffraction limited emitters/spots.
KNIME ImageJ Configuration:
I've configured the ImageJ plugin path in the KNIME preferences correctly to a local installation of Fiji (NOT the default path from KNIP).
KNIME 3.2.1, 64-bit Windows 7, JRE 8.x
KNIME Image Processing 184.108.40.206610200657
KNIME Image Processing - ImageJ Integration (Beta) 0.11.2.v201610060929