Since upgrading to 4.7.0, and now 4.7.1, the Indigo nodes won’t load with multiple “ERROR RepositoryManager” console messages on startup (see below).
This is only happening on my MacOS system. Both linux (opensuse, ubuntu) and Windows are working OK.
It looks like a repeat of the missing cairo libraries MacOS - RepositoryManager errors on startup but the solution there hasn’t worked.
I’ve tried deinstalling/reinstalling the Indigo nodes, but that didn’t work.
macos 13.2
knime 4.7.1
indigo 2.0.0.qualifier
(knime debug log available if required)
Console output:
ERROR DataTypeRegistry Could not create data cell factory ‘com.epam.indigo.knime.cell.IndigoMolCellFactory’ for ‘com.epam.indigo.knime.cell.IndigoMolCell’ from plug-in ‘com.epam.indigo.knime.plugin’: Plug-in com.epam.indigo.knime.plugin was unable to load class com.epam.indigo.knime.cell.IndigoMolCellFactory.
ERROR DataTypeRegistry Could not create data cell factory ‘com.epam.indigo.knime.cell.IndigoQueryMolCellFactory’ for ‘com.epam.indigo.knime.cell.IndigoQueryMolCell’ from plug-in ‘com.epam.indigo.knime.plugin’: Plug-in com.epam.indigo.knime.plugin was unable to load class com.epam.indigo.knime.cell.IndigoQueryMolCellFactory.
ERROR DataTypeRegistry Could not create data cell factory ‘com.epam.indigo.knime.cell.IndigoQueryReactionCellFactory’ for ‘com.epam.indigo.knime.cell.IndigoQueryReactionCell’ from plug-in ‘com.epam.indigo.knime.plugin’: Plug-in com.epam.indigo.knime.plugin was unable to load class com.epam.indigo.knime.cell.IndigoQueryReactionCellFactory.
ERROR DataTypeRegistry Could not create data cell factory ‘com.epam.indigo.knime.cell.IndigoReactionCellFactory’ for ‘com.epam.indigo.knime.cell.IndigoReactionCell’ from plug-in ‘com.epam.indigo.knime.plugin’: Plug-in com.epam.indigo.knime.plugin was unable to load class com.epam.indigo.knime.cell.IndigoReactionCellFactory.
ERROR RepositoryManager Node ‘com.epam.indigo.knime.compjoin.IndigoComponentCombinerNodeFactory’ from plugin ‘com.epam.indigo.knime.plugin’ could not be created. The corresponding plugin bundle could not be activated!
ERROR RepositoryManager Node ‘com.epam.indigo.knime.compsep.IndigoComponentSeparatorNodeFactory’ from plugin ‘com.epam.indigo.knime.plugin’ could not be created. The corresponding plugin bundle could not be activated!
ERROR RepositoryManager Node ‘com.epam.indigo.knime.murcko.IndigoMurckoScaffoldNodeFactory’ from plugin ‘com.epam.indigo.knime.plugin’ could not be created. The corresponding plugin bundle could not be activated!
ERROR RepositoryManager Node ‘com.epam.indigo.knime.rgdecomp.IndigoRGroupDecomposerNodeFactory’ from plugin ‘com.epam.indigo.knime.plugin’ could not be created. The corresponding plugin bundle could not be activated!
ERROR RepositoryManager Node ‘com.epam.indigo.knime.scaffold.IndigoScaffoldFinderNodeFactory’ from plugin ‘com.epam.indigo.knime.plugin’ could not be created. The corresponding plugin bundle could not be activated!
ERROR RepositoryManager Node ‘com.epam.indigo.knime.submatchcounter.IndigoSubstructureMatchCounterNodeFactory’ from plugin ‘com.epam.indigo.knime.plugin’ could not be created. The corresponding plugin bundle could not be activated!
ERROR RepositoryManager Node ‘com.epam.indigo.knime.submatcher.IndigoSubstructureMatcherNodeFactory’ from plugin ‘com.epam.indigo.knime.plugin’ could not be created. The corresponding plugin bundle could not be activated!
ERROR RepositoryManager Node ‘com.epam.indigo.knime.transform.IndigoMoleculeTransformNodeFactory’ from plugin ‘com.epam.indigo.knime.plugin’ could not be created. The corresponding plugin bundle could not be activated!
ERROR RepositoryManager Node ‘com.epam.indigo.knime.isomers.IndigoIsomersEnumeratorNodeFactory’ from plugin ‘com.epam.indigo.knime.plugin’ could not be created. The corresponding plugin bundle could not be activated!
ERROR RepositoryManager Node ‘com.epam.indigo.knime.highlighter.IndigoHighlighterNodeFactory’ from plugin ‘com.epam.indigo.knime.plugin’ could not be created. The corresponding plugin bundle could not be activated!
ERROR RepositoryManager Node ‘com.epam.indigo.knime.weightfilter.IndigoWeightSplitterNodeFactory’ from plugin ‘com.epam.indigo.knime.plugin’ could not be created. The corresponding plugin bundle could not be activated!
ERROR RepositoryManager Node ‘com.epam.indigo.knime.formulafilter.IndigoFormulaFilterNodeFactory’ from plugin ‘com.epam.indigo.knime.plugin’ could not be created. The corresponding plugin bundle could not be activated!
ERROR RepositoryManager Node ‘com.epam.indigo.knime.organicfilter.IndigoOrganicSplitterNodeFactory’ from plugin ‘com.epam.indigo.knime.plugin’ could not be created. The corresponding plugin bundle could not be activated!
ERROR RepositoryManager Node ‘com.epam.indigo.knime.rautomapper.IndigoReactionAutomapperNodeFactory’ from plugin ‘com.epam.indigo.knime.plugin’ could not be created. The corresponding plugin bundle could not be activated!
ERROR RepositoryManager Node ‘com.epam.indigo.knime.rbuilder.IndigoReactionBuilderNodeFactory’ from plugin ‘com.epam.indigo.knime.plugin’ could not be created. The corresponding plugin bundle could not be activated!
ERROR RepositoryManager Node ‘com.epam.indigo.knime.rsplitter.IndigoReactionSplitterNodeFactory’ from plugin ‘com.epam.indigo.knime.plugin’ could not be created. The corresponding plugin bundle could not be activated!
ERROR RepositoryManager Node ‘com.epam.indigo.knime.arom.IndigoAromatizerNodeFactory’ from plugin ‘com.epam.indigo.knime.plugin’ could not be created. The corresponding plugin bundle could not be activated!
ERROR RepositoryManager Node ‘com.epam.indigo.knime.dearom.IndigoDearomatizerNodeFactory’ from plugin ‘com.epam.indigo.knime.plugin’ could not be created. The corresponding plugin bundle could not be activated!
ERROR RepositoryManager Node ‘com.epam.indigo.knime.areplacer.IndigoAtomReplacerNodeFactory’ from plugin ‘com.epam.indigo.knime.plugin’ could not be created. The corresponding plugin bundle could not be activated!
ERROR RepositoryManager Node ‘com.epam.indigo.knime.bondreplacer.IndigoBondReplacerNodeFactory’ from plugin ‘com.epam.indigo.knime.plugin’ could not be created. The corresponding plugin bundle could not be activated!
ERROR RepositoryManager Node ‘com.epam.indigo.knime.fremover.IndigoFeatureRemoverNodeFactory’ from plugin ‘com.epam.indigo.knime.plugin’ could not be created. The corresponding plugin bundle could not be activated!
ERROR RepositoryManager Node ‘com.epam.indigo.knime.hadder.IndigoHydrogenAdderNodeFactory’ from plugin ‘com.epam.indigo.knime.plugin’ could not be created. The corresponding plugin bundle could not be activated!
ERROR RepositoryManager Node ‘com.epam.indigo.knime.hremover.IndigoHydrogenRemoverNodeFactory’ from plugin ‘com.epam.indigo.knime.plugin’ could not be created. The corresponding plugin bundle could not be activated!
ERROR RepositoryManager Node ‘com.epam.indigo.knime.layout.IndigoLayout2DNodeFactory’ from plugin ‘com.epam.indigo.knime.plugin’ could not be created. The corresponding plugin bundle could not be activated!
ERROR RepositoryManager Node ‘com.epam.indigo.knime.standardizer.IndigoStandardizerNodeFactory’ from plugin ‘com.epam.indigo.knime.plugin’ could not be created. The corresponding plugin bundle could not be activated!
ERROR RepositoryManager Node ‘com.epam.indigo.knime.molprop.IndigoMoleculePropertiesNodeFactory’ from plugin ‘com.epam.indigo.knime.plugin’ could not be created. The corresponding plugin bundle could not be activated!
ERROR RepositoryManager Node ‘com.epam.indigo.knime.valence.IndigoValenceCheckerNodeFactory’ from plugin ‘com.epam.indigo.knime.plugin’ could not be created. The corresponding plugin bundle could not be activated!
ERROR RepositoryManager Node ‘com.epam.indigo.knime.canonsmiles.IndigoCanonicalSmilesNodeFactory’ from plugin ‘com.epam.indigo.knime.plugin’ could not be created. The corresponding plugin bundle could not be activated!
ERROR RepositoryManager Node ‘com.epam.indigo.knime.fpsim.IndigoFingerprintSimilarityNodeFactory’ from plugin ‘com.epam.indigo.knime.plugin’ could not be created. The corresponding plugin bundle could not be activated!
ERROR RepositoryManager Node ‘com.epam.indigo.knime.molfp.IndigoMoleculeFingerprinterNodeFactory’ from plugin ‘com.epam.indigo.knime.plugin’ could not be created. The corresponding plugin bundle could not be activated!
ERROR RepositoryManager Node ‘com.epam.indigo.knime.combchem.IndigoReactionGeneratorNodeFactory’ from plugin ‘com.epam.indigo.knime.plugin’ could not be created. The corresponding plugin bundle could not be activated!
ERROR RepositoryManager Node ‘com.epam.indigo.knime.inchi.IndigoInchiNodeFactory’ from plugin ‘com.epam.indigo.knime.plugin’ could not be created. The corresponding plugin bundle could not be activated!
(the other)
Simon