Java error when opening KNIME

VAGR_ISK · July 16, 2022, 9:47am

Although KNIME is working well so far, I am getting the following error in the console when opening the KNIME app in my M1 Mac:

ROR KNIPLogService [ERROR] Cannot create plugin: class=‘org.scijava.plugins.scripting.javascript.JavaScriptScriptLanguage’, name=‘JavaScript’, priority=0.0, enabled=true, pluginType=ScriptLanguage
java.lang.IllegalArgumentException: No such script engine: javascript
at org.scijava.script.AdaptedScriptLanguage.findFactory(AdaptedScriptLanguage.java:152)
at org.scijava.script.AdaptedScriptLanguage.(AdaptedScriptLanguage.java:74)
at org.scijava.plugins.scripting.javascript.JavaScriptScriptLanguage.(JavaScriptScriptLanguage.java:59)
at java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance(Unknown Source)
at java.base/jdk.internal.reflect.DelegatingConstructorAccessorImpl.newInstance(Unknown Source)
at java.base/java.lang.reflect.Constructor.newInstanceWithCaller(Unknown Source)
at java.base/java.lang.reflect.ReflectAccess.newInstance(Unknown Source)
at java.base/jdk.internal.reflect.ReflectionFactory.newInstance(Unknown Source)
at java.base/java.lang.Class.newInstance(Unknown Source)
at org.scijava.plugin.PluginInfo.createInstance(PluginInfo.java:306)
at org.scijava.plugin.DefaultPluginService.createInstance(DefaultPluginService.java:237)
at org.scijava.plugin.DefaultPluginService.createInstances(DefaultPluginService.java:226)
at org.scijava.plugin.DefaultPluginService.createInstancesOfType(DefaultPluginService.java:217)
at org.scijava.plugin.AbstractSingletonService.initInstances(AbstractSingletonService.java:138)
at org.scijava.plugin.AbstractSingletonService.getInstances(AbstractSingletonService.java:77)
at org.scijava.plugin.SingletonService.lambda$initialize$0(SingletonService.java:97)
at org.scijava.object.ObjectIndex.resolvePending(ObjectIndex.java:388)
at org.scijava.object.ObjectIndex.get(ObjectIndex.java:133)
at org.scijava.object.DefaultObjectService.getObjects(DefaultObjectService.java:87)
at org.knime.knip.imagej2.core.IJGateway.isMultipleChoiceObject(IJGateway.java:352)
at org.knime.knip.imagej2.core.IJGateway.isSupportedInputType(IJGateway.java:340)
at org.knime.knip.imagej2.core.IJGateway.findSupportedModules(IJGateway.java:243)
at org.knime.knip.imagej2.core.IJGateway.(IJGateway.java:157)
at org.knime.knip.imagej2.core.IJGateway.getInstance(IJGateway.java:134)
at org.knime.knip.imagej2.core.IJGateway.getImageJVersion(IJGateway.java:169)
at org.knime.knip.imagej2.core.node.IJNodeSetFactory.(IJNodeSetFactory.java:99)
at java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance(Unknown Source)
at java.base/jdk.internal.reflect.DelegatingConstructorAccessorImpl.newInstance(Unknown Source)
at java.base/java.lang.reflect.Constructor.newInstanceWithCaller(Unknown Source)
at java.base/java.lang.reflect.Constructor.newInstance(Unknown Source)
at org.eclipse.core.internal.registry.osgi.RegistryStrategyOSGI.createExecutableExtension(RegistryStrategyOSGI.java:204)
at org.eclipse.core.internal.registry.ExtensionRegistry.createExecutableExtension(ExtensionRegistry.java:920)
at org.eclipse.core.internal.registry.ConfigurationElement.createExecutableExtension(ConfigurationElement.java:246)
at org.eclipse.core.internal.registry.ConfigurationElementHandle.createExecutableExtension(ConfigurationElementHandle.java:63)
at org.knime.core.node.extension.NodeSetFactoryExtension.from(NodeSetFactoryExtension.java:265)
at java.base/java.util.stream.ReferencePipeline$3$1.accept(Unknown Source)
at java.base/java.util.Spliterators$ArraySpliterator.forEachRemaining(Unknown Source)
at java.base/java.util.stream.ReferencePipeline$Head.forEach(Unknown Source)
at java.base/java.util.stream.ReferencePipeline$7$1.accept(Unknown Source)
at java.base/java.util.Spliterators$ArraySpliterator.forEachRemaining(Unknown Source)
at java.base/java.util.stream.AbstractPipeline.copyInto(Unknown Source)
at java.base/java.util.stream.AbstractPipeline.wrapAndCopyInto(Unknown Source)
at java.base/java.util.stream.ReduceOps$ReduceTask.doLeaf(Unknown Source)
at java.base/java.util.stream.ReduceOps$ReduceTask.doLeaf(Unknown Source)
at java.base/java.util.stream.AbstractTask.compute(Unknown Source)
at java.base/java.util.concurrent.CountedCompleter.exec(Unknown Source)
at java.base/java.util.concurrent.ForkJoinTask.doExec(Unknown Source)
at java.base/java.util.concurrent.ForkJoinPool$WorkQueue.topLevelExec(Unknown Source)
at java.base/java.util.concurrent.ForkJoinPool.scan(Unknown Source)
at java.base/java.util.concurrent.ForkJoinPool.runWorker(Unknown Source)
at java.base/java.util.concurrent.ForkJoinWorkerThread.run(Unknown Source)

ERROR KNIPLogService [ERROR] Cannot create plugin: class=‘org.scijava.plugins.scripting.javascript.JavaScriptScriptLanguage’, name=‘JavaScript’, priority=0.0, enabled=true, pluginType=ScriptLanguage
java.lang.IllegalArgumentException: No such script engine: javascript
at org.scijava.script.AdaptedScriptLanguage.findFactory(AdaptedScriptLanguage.java:152)
at org.scijava.script.AdaptedScriptLanguage.(AdaptedScriptLanguage.java:74)
at org.scijava.plugins.scripting.javascript.JavaScriptScriptLanguage.(JavaScriptScriptLanguage.java:59)
at java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance(Unknown Source)
at java.base/jdk.internal.reflect.DelegatingConstructorAccessorImpl.newInstance(Unknown Source)
at java.base/java.lang.reflect.Constructor.newInstanceWithCaller(Unknown Source)
at java.base/java.lang.reflect.ReflectAccess.newInstance(Unknown Source)
at java.base/jdk.internal.reflect.ReflectionFactory.newInstance(Unknown Source)
at java.base/java.lang.Class.newInstance(Unknown Source)
at org.scijava.plugin.PluginInfo.createInstance(PluginInfo.java:306)
at org.scijava.plugin.DefaultPluginService.createInstance(DefaultPluginService.java:237)
at org.scijava.plugin.DefaultPluginService.createInstances(DefaultPluginService.java:226)
at org.scijava.plugin.DefaultPluginService.createInstancesOfType(DefaultPluginService.java:217)
at org.scijava.plugin.AbstractSingletonService.initInstances(AbstractSingletonService.java:138)
at org.scijava.plugin.AbstractSingletonService.getInstances(AbstractSingletonService.java:77)
at org.scijava.plugin.SingletonService.lambda$initialize$0(SingletonService.java:97)
at org.scijava.object.ObjectIndex.resolvePending(ObjectIndex.java:388)
at org.scijava.object.ObjectIndex.get(ObjectIndex.java:133)
at org.scijava.object.DefaultObjectService.getObjects(DefaultObjectService.java:87)
at org.knime.knip.imagej2.core.IJGateway.isMultipleChoiceObject(IJGateway.java:352)
at org.knime.knip.imagej2.core.IJGateway.isSupportedInputType(IJGateway.java:340)
at org.knime.knip.imagej2.core.IJGateway.findSupportedModules(IJGateway.java:243)
at org.knime.knip.imagej2.core.IJGateway.(IJGateway.java:157)
at org.knime.knip.imagej2.core.IJGateway.getInstance(IJGateway.java:134)
at org.knime.knip.imagej2.core.IJGateway.getImageJVersion(IJGateway.java:169)
at org.knime.knip.imagej2.core.node.IJNodeSetFactory.(IJNodeSetFactory.java:99)
at java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance(Unknown Source)
at java.base/jdk.internal.reflect.DelegatingConstructorAccessorImpl.newInstance(Unknown Source)
at java.base/java.lang.reflect.Constructor.newInstanceWithCaller(Unknown Source)
at java.base/java.lang.reflect.Constructor.newInstance(Unknown Source)
at org.eclipse.core.internal.registry.osgi.RegistryStrategyOSGI.createExecutableExtension(RegistryStrategyOSGI.java:204)
at org.eclipse.core.internal.registry.ExtensionRegistry.createExecutableExtension(ExtensionRegistry.java:920)
at org.eclipse.core.internal.registry.ConfigurationElement.createExecutableExtension(ConfigurationElement.java:246)
at org.eclipse.core.internal.registry.ConfigurationElementHandle.createExecutableExtension(ConfigurationElementHandle.java:63)
at org.knime.core.node.extension.NodeSetFactoryExtension.from(NodeSetFactoryExtension.java:265)
at java.base/java.util.stream.ReferencePipeline$3$1.accept(Unknown Source)
at java.base/java.util.Spliterators$ArraySpliterator.forEachRemaining(Unknown Source)
at java.base/java.util.stream.ReferencePipeline$Head.forEach(Unknown Source)
at java.base/java.util.stream.ReferencePipeline$7$1.accept(Unknown Source)
at java.base/java.util.Spliterators$ArraySpliterator.forEachRemaining(Unknown Source)
at java.base/java.util.stream.AbstractPipeline.copyInto(Unknown Source)
at java.base/java.util.stream.AbstractPipeline.wrapAndCopyInto(Unknown Source)
at java.base/java.util.stream.ReduceOps$ReduceTask.doLeaf(Unknown Source)
at java.base/java.util.stream.ReduceOps$ReduceTask.doLeaf(Unknown Source)
at java.base/java.util.stream.AbstractTask.compute(Unknown Source)
at java.base/java.util.concurrent.CountedCompleter.exec(Unknown Source)
at java.base/java.util.concurrent.ForkJoinTask.doExec(Unknown Source)
at java.base/java.util.concurrent.ForkJoinPool$WorkQueue.topLevelExec(Unknown Source)
at java.base/java.util.concurrent.ForkJoinPool.scan(Unknown Source)
at java.base/java.util.concurrent.ForkJoinPool.runWorker(Unknown Source)
at java.base/java.util.concurrent.ForkJoinWorkerThread.run(Unknown Source)

Any idea?

Thanks in advance,

AG

nagarjun36 · July 18, 2022, 9:42am

Hi @VAGR_ISK ,

We understand that you are facing issues while opening KNIME app. Can we know,

If there was anything that was changed recently on your environment?
what version of JAVA are you running (“java -version”).
Did we try restarting your KNIME AP? does the error go away after the restart?
which version of KNIME AP you are using?Error seems to be related to KNIP plugins, we suggest you to update your KAP to latest version?

Regards,
Nagarjun S

thor · July 18, 2022, 11:01am

This is an issue with the KNIME Image Processing extension from the community contributions. It looks like it has not been adapted to Java 17. Not sure, who is maintaining it, maybe @christian.birkhold knows?

VAGR_ISK · July 18, 2022, 4:00pm

Hi @nagarjun36 that started to happen since I make the latest KNIME update.

My actual KNIME version is 4.6.0.

This version was working well until about 3 days ago when an actualization came and since then the error persists.

I am not sure about this KAP, but I will look into it.

Thanks.

AG

gab1one · July 19, 2022, 1:47pm

Hi @VAGR_ISK,

Are you using the ImageJ extension and do you have registered an ImageJ installation to it, or are you using an ImageJ1 snippet node?

best,
Gabriel

VAGR_ISK · July 22, 2022, 2:53pm

HI @gab1one

I install ImageJ2 in my system, but I haven’t registered ImageJ in KNIME. I was looking for the documentation about installation but it bring me to a loop of web pages that have links to each other or to themselves (link), so I have actually no way to know how to register ImageJ or install ImageJ2 application or plugins inside KNIME.

I will appreciate any direction to follow.

Thanks in advance,

AG.

VAGR_ISK · July 26, 2022, 9:11pm

Hi @gab1one ,

I saw a similar post and realized that the problem is related to KNIP.

Here is the screenshot of the KNIP plugins in my KNIME. They are all broken.

Do you know how to reinstall KNIP plugins?

Thanks in advance,

AG

nagarjun36 · August 31, 2022, 2:27pm

Hi @VAGR_ISK,

You can uninstall the extension “KNIME Image Processing” by navigating to Installed Software. Once it is uninstalled, you can navigate to File ->Install Extensions->Search for KNIME Image Processing Extension and install it again.

Let us know if you have any further queries related to the topic.

Regards,
Nagarjun S

system · November 29, 2022, 2:27pm

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