Knime 4.5.0 & RDKit v4.6.1

Hi,
I have the version 4.5.0 of Knime and the version of RDKit corresponding to 4.5.0.v202207051536 and all is fine.
But probably due to the update of RDKit Announcing v4.6 of the RDKit nodes for KNIME , I encounter this error:

Cannot complete the install because one or more required items could not be found.
Software being installed: RDKit Nodes Feature 4.6.1.v202212070507 (org.rdkit.knime.feature.feature.group 4.6.1.v202212070507)
Missing requirement: RDKit binaries for 64bit Linux 4.6.1.v202212070507 (org.rdkit.knime.bin.linux.x86_64 4.6.1.v202212070507) requires ‘osgi.ee; (&(osgi.ee=JavaSE)(version=17))’ but it could not be found
Cannot satisfy dependency:
From: RDKit Binaries and Chemistry Type Definitions Feature 4.6.1.v202212070507 (org.rdkit.knime.binaries.feature.feature.group 4.6.1.v202212070507)
To: org.eclipse.equinox.p2.iu; org.rdkit.knime.bin.linux.x86_64 [4.6.1.v202212070507,4.6.1.v202212070507]
Cannot satisfy dependency:
From: RDKit Nodes Feature 4.6.1.v202212070507 (org.rdkit.knime.feature.feature.group 4.6.1.v202212070507)
To: org.eclipse.equinox.p2.iu; org.rdkit.knime.binaries.feature.feature.group [4.6.1.v202212070507,4.6.1.v202212070507]

None solution is found by Knime during the installation.

What can I do ?

My guess is that you have configured only the nightly build update site of KNIME https://update.knime.com/community-contributions/trunk. Can you confirm this? This update site contains in the moment RDKit Feature 4.6.1 (compatible with KNIME 4.6+) and will be very soon upgraded to RDKit Feature 4.7.0 (compatible with KNIME 4.7+). Apparently, there are no older RDKit Feature versions kept (@thor and @gab1one, any idea why?), but only the very latest build would be contained.

RDKit Feature 4.6.1 is built for KNIME 4.6+. I do not understand why it would actually show up for you in KNIME 4.5 unless you unset the option “Show only software applicable to target environment”. The last version that is compatible with KNIME 4.5 is RDKit 4.6.0 (also just released), which is contained in the KNIME Community Trusted update site https://update.knime.com/community-contributions/trusted/4.5.

Different ways to get your issue fixed:

Hope, it helps!

Kind regards,
Manuel

1 Like

Yes, this my command line:

./knime -application org.eclipse.equinox.p2.director -nosplash -consoleLog -r http://update.knime.org/community-contributions/trunk,https://update.knime.com/community-contributions/trusted/4.5,https://update.knime.com/analytics-platform/4.5 -i org.rdkit.knime.feature.feature.group/4.5.0.v202207051536

You are right the version 4.6.0.v202212062102 was installed properly.
It’s very annoying to remove last release at each update.

The problem is solved, thanks

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