KNIME crashes when using Activity Cliff Viewer node

#1

Hi guys,

I'm trying to use the activity cliff viewer node by Erl Wood Cheminformatics package. When I try to open up the network view KNIME crash down. It seems the JVM does not support the opening of the view. Do you any suggestion?

Here are my crash details:

JVM terminated. Exit code=1

/usr/local/knime/knime-full_2.11.0/jre/bin/java

-XX:MaxPermSize=2g

-server

-Dsun.java2d.d3d=false

-Dosgi.classloader.lock=classname

-XX:+UnlockDiagnosticVMOptions

-XX:+UnsyncloadClass

-Dknime.enable.fastload=true

-Dorg.eclipse.swt.internal.gtk.cairoGraphics=false

-Dorg.eclipse.swt.internal.gtk.useCairo=false

-Xms2g

-Xmx12g

-jar /usr/local/knime/knime-full_2.11.0//plugins/org.eclipse.equinox.launcher_1.2.0.v20110502.jar

-os linux

-ws gtk

-arch x86_64

-showsplash

-launcher /usr/local/knime/knime-full_2.11.0/knime

-name Knime

--launcher.library /usr/local/knime/knime-full_2.11.0//plugins/org.eclipse.equinox.launcher.gtk.linux.x86_64_1.1.100.v20110505/eclipse_1407.so

-startup /usr/local/knime/knime-full_2.11.0//plugins/org.eclipse.equinox.launcher_1.2.0.v20110502.jar

--launcher.overrideVmargs

-exitdata a7800b

-vm /usr/local/knime/knime-full_2.11.0/jre/bin/java

-vmargs

-XX:MaxPermSize=2g

-server

-Dsun.java2d.d3d=false

-Dosgi.classloader.lock=classname

-XX:+UnlockDiagnosticVMOptions

-XX:+UnsyncloadClass

-Dknime.enable.fastload=true

-Dorg.eclipse.swt.internal.gtk.cairoGraphics=false

-Dorg.eclipse.swt.internal.gtk.useCairo=false

-Xms2g

-Xmx12g

-jar /usr/local/knime/knime-full_2.11.0//plugins/org.eclipse.equinox.launcher_1.2.0.v20110502.jar 

Thanks in advance for any help.

Gio

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#2

Hi Gio,

We've not yet setup all the automated tests for the new Erl Wood nodes and clearly this means some bugs slip through.  This one sounds nasty and we'll take a look.  Can you see a xxxx.log file in the directory 
/usr/local/knime/knime-full_2.11.0/jre/bin/java where the file name is a number (the process id)?  If so please attach it so we can take a look.  I've not seen this error on windows so it might be linux related.

We'll take a look.

James

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#3

Hi James,

Thanks for having a look at that. Unfortunately I don't see any log file on that directory (/usr/local/knime/knime-full_2.11.0/jre/bin/). Are you referring to a log file different from the standard KNIME log file, right?

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