I need to use MrvConverter convert Smiles structure to Marvin.
I have hundreds of thousands data.
However, MrvConverter complains about
ERROR MrvConverter Execute failed: ("ArrayIndexOutOfBoundsException"): 4
What version of the JChem Extensions do you use?
I guess that your smiles might contain data that Marvin can not support.
The current version of JChem Extensions skip such a data to keep executing the processing.
Please refer to the following site for the updating method.
I use version of the JChem Extensions is v2.1.2.
By the way,I divided data into a small group , and it can run no error messenger.