I have a knime table with a list of short peptides which I'm converting from "fasta" to "smiles" format using the OpenBabel node.
Some strings, e.g. CKARMVS are being interpreted as DNA, in this case:
O[P@@](=O)(O)OC[C@H]1O[C@H](C[C@@H]1O[P@@](=O)(O)OC[C@H]1O[C@H](C[C@@H]1O[P@@](=O)(O)OC[C@H]1O[C@H](C[C@@H]1O[P@@](=O)(O)OC[C@H]1O[C@H](C[C@@H]1O[P@@](=O)(O)OC[C@H]1O[C@H](C[C@@H]1O[P@@](=O)(O)OC[C@H]1O[C@H](C[C@@H]1O[P@@](=O)(O)OC[C@H]1O[C@H](C[C@@H]1O)N)N)N)n1cnc2cnc(N)nc12)n1cnc2c(N)ncnc12)N)n1c(=O)nc(N)cc1.O[P@@](=O)(O)OC[C@H]1O[C@H](C[C@@H]1O[P@@](=O)(O)OC[C@H]1O[C@H](C[C@@H]1O[P@@](=O)(O)OC[C@H]1O[C@H](C[C@@H]1O[P@@](=O)(O)OC[C@H]1O[C@H](C[C@@H]1O[P@@](=O)(O)OC[C@H]1O[C@H](C[C@@H]1O[P@@](=O)(O)OC[C@H]1O[C@H](C[C@@H]1O[P@@](=O)(O)OC[C@H]1O[C@H](C[C@@H]1O)n1cnc2c(=O)[nH]c(N)nc12)N)n1c(=O)[nH]c(=O)c(C)c1)n1c(=O)nccc1)N)N)N
Is there a way to force these to be interpreted as peptides?
Cheers,
Steve.