Hello,
I have upgraded knime 5.4 to 5.5. in my ubuntu 24.04 system, and the main knime window is a small window without window controls on it. The window control appear as a separate window (see figure). Also the following errors appear:
ERROR ForkJoinPool.commonPool-worker-2 KNIPLogService [ERROR] Cannot create plugin: class=‘org.scijava.plugins.scripting.javascript.JavaScriptScriptLanguage’, name=‘JavaScript’, priority=0.0, enabled=true, pluginType=ScriptLanguage
java.lang.IllegalArgumentException: No such script engine: javascript
at org.scijava.script.AdaptedScriptLanguage.findFactory(AdaptedScriptLanguage.java:152)
at org.scijava.script.AdaptedScriptLanguage.(AdaptedScriptLanguage.java:74)
at org.scijava.plugins.scripting.javascript.JavaScriptScriptLanguage.(JavaScriptScriptLanguage.java:59)
at java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance(Unknown Source)
at java.base/jdk.internal.reflect.DelegatingConstructorAccessorImpl.newInstance(Unknown Source)
at java.base/java.lang.reflect.Constructor.newInstanceWithCaller(Unknown Source)
at java.base/java.lang.reflect.ReflectAccess.newInstance(Unknown Source)
at java.base/jdk.internal.reflect.ReflectionFactory.newInstance(Unknown Source)
at java.base/java.lang.Class.newInstance(Unknown Source)
at org.scijava.plugin.PluginInfo.createInstance(PluginInfo.java:306)
at org.scijava.plugin.DefaultPluginService.createInstance(DefaultPluginService.java:237)
at org.scijava.plugin.DefaultPluginService.createInstances(DefaultPluginService.java:226)
at org.scijava.plugin.DefaultPluginService.createInstancesOfType(DefaultPluginService.java:217)
at org.scijava.plugin.AbstractSingletonService.initInstances(AbstractSingletonService.java:138)
at org.scijava.plugin.AbstractSingletonService.getInstances(AbstractSingletonService.java:77)
at org.scijava.plugin.SingletonService.lambda$initialize$0(SingletonService.java:97)
at org.scijava.object.ObjectIndex.resolvePending(ObjectIndex.java:388)
at org.scijava.object.ObjectIndex.get(ObjectIndex.java:133)
at org.scijava.object.DefaultObjectService.getObjects(DefaultObjectService.java:87)
at org.knime.knip.imagej2.core.IJGateway.isMultipleChoiceObject(IJGateway.java:352)
at org.knime.knip.imagej2.core.IJGateway.isSupportedInputType(IJGateway.java:340)
at org.knime.knip.imagej2.core.IJGateway.findSupportedModules(IJGateway.java:243)
at org.knime.knip.imagej2.core.IJGateway.(IJGateway.java:157)
at org.knime.knip.imagej2.core.IJGateway.getInstance(IJGateway.java:134)
at org.knime.knip.imagej2.core.IJGateway.getImageJVersion(IJGateway.java:169)
at org.knime.knip.imagej2.core.node.IJNodeSetFactory.(IJNodeSetFactory.java:99)
at java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance(Unknown Source)
at java.base/jdk.internal.reflect.DelegatingConstructorAccessorImpl.newInstance(Unknown Source)
at java.base/java.lang.reflect.Constructor.newInstanceWithCaller(Unknown Source)
at java.base/java.lang.reflect.Constructor.newInstance(Unknown Source)
at org.eclipse.core.internal.registry.osgi.RegistryStrategyOSGI.createExecutableExtension(RegistryStrategyOSGI.java:233)
at org.eclipse.core.internal.registry.ExtensionRegistry.createExecutableExtension(ExtensionRegistry.java:987)
at org.eclipse.core.internal.registry.ConfigurationElement.createExecutableExtension(ConfigurationElement.java:255)
at org.eclipse.core.internal.registry.ConfigurationElementHandle.createExecutableExtension(ConfigurationElementHandle.java:65)
at org.knime.core.node.extension.NodeSetFactoryExtension.from(NodeSetFactoryExtension.java:274)
at java.base/java.util.stream.ReferencePipeline$3$1.accept(Unknown Source)
at java.base/java.util.Spliterators$ArraySpliterator.forEachRemaining(Unknown Source)
at java.base/java.util.stream.AbstractPipeline.copyInto(Unknown Source)
at java.base/java.util.stream.AbstractPipeline.wrapAndCopyInto(Unknown Source)
at java.base/java.util.stream.Nodes$CollectorTask.doLeaf(Unknown Source)
at java.base/java.util.stream.Nodes$CollectorTask.doLeaf(Unknown Source)
at java.base/java.util.stream.AbstractTask.compute(Unknown Source)
at java.base/java.util.concurrent.CountedCompleter.exec(Unknown Source)
at java.base/java.util.concurrent.ForkJoinTask.doExec(Unknown Source)
at java.base/java.util.concurrent.ForkJoinPool$WorkQueue.topLevelExec(Unknown Source)
at java.base/java.util.concurrent.ForkJoinPool.scan(Unknown Source)
at java.base/java.util.concurrent.ForkJoinPool.runWorker(Unknown Source)
at java.base/java.util.concurrent.ForkJoinWorkerThread.run(Unknown Source)
ERROR ForkJoinPool.commonPool-worker-2 KNIPLogService [ERROR] Cannot create plugin: class=‘org.scijava.plugins.scripting.javascript.JavaScriptScriptLanguage’, name=‘JavaScript’, priority=0.0, enabled=true, pluginType=ScriptLanguage
java.lang.IllegalArgumentException: No such script engine: javascript
at org.scijava.script.AdaptedScriptLanguage.findFactory(AdaptedScriptLanguage.java:152)
at org.scijava.script.AdaptedScriptLanguage.(AdaptedScriptLanguage.java:74)
at org.scijava.plugins.scripting.javascript.JavaScriptScriptLanguage.(JavaScriptScriptLanguage.java:59)
at java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance(Unknown Source)
at java.base/jdk.internal.reflect.DelegatingConstructorAccessorImpl.newInstance(Unknown Source)
at java.base/java.lang.reflect.Constructor.newInstanceWithCaller(Unknown Source)
at java.base/java.lang.reflect.ReflectAccess.newInstance(Unknown Source)
at java.base/jdk.internal.reflect.ReflectionFactory.newInstance(Unknown Source)
at java.base/java.lang.Class.newInstance(Unknown Source)
at org.scijava.plugin.PluginInfo.createInstance(PluginInfo.java:306)
at org.scijava.plugin.DefaultPluginService.createInstance(DefaultPluginService.java:237)
at org.scijava.plugin.DefaultPluginService.createInstances(DefaultPluginService.java:226)
at org.scijava.plugin.DefaultPluginService.createInstancesOfType(DefaultPluginService.java:217)
at org.scijava.plugin.AbstractSingletonService.initInstances(AbstractSingletonService.java:138)
at org.scijava.plugin.AbstractSingletonService.getInstances(AbstractSingletonService.java:77)
at org.scijava.plugin.SingletonService.lambda$initialize$0(SingletonService.java:97)
at org.scijava.object.ObjectIndex.resolvePending(ObjectIndex.java:388)
at org.scijava.object.ObjectIndex.get(ObjectIndex.java:133)
at org.scijava.object.DefaultObjectService.getObjects(DefaultObjectService.java:87)
at org.knime.knip.imagej2.core.IJGateway.isMultipleChoiceObject(IJGateway.java:352)
at org.knime.knip.imagej2.core.IJGateway.isSupportedInputType(IJGateway.java:340)
at org.knime.knip.imagej2.core.IJGateway.findSupportedModules(IJGateway.java:243)
at org.knime.knip.imagej2.core.IJGateway.(IJGateway.java:157)
at org.knime.knip.imagej2.core.IJGateway.getInstance(IJGateway.java:134)
at org.knime.knip.imagej2.core.IJGateway.getImageJVersion(IJGateway.java:169)
at org.knime.knip.imagej2.core.node.IJNodeSetFactory.(IJNodeSetFactory.java:99)
at java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance(Unknown Source)
at java.base/jdk.internal.reflect.DelegatingConstructorAccessorImpl.newInstance(Unknown Source)
at java.base/java.lang.reflect.Constructor.newInstanceWithCaller(Unknown Source)
at java.base/java.lang.reflect.Constructor.newInstance(Unknown Source)
at org.eclipse.core.internal.registry.osgi.RegistryStrategyOSGI.createExecutableExtension(RegistryStrategyOSGI.java:233)
at org.eclipse.core.internal.registry.ExtensionRegistry.createExecutableExtension(ExtensionRegistry.java:987)
at org.eclipse.core.internal.registry.ConfigurationElement.createExecutableExtension(ConfigurationElement.java:255)
at org.eclipse.core.internal.registry.ConfigurationElementHandle.createExecutableExtension(ConfigurationElementHandle.java:65)
at org.knime.core.node.extension.NodeSetFactoryExtension.from(NodeSetFactoryExtension.java:274)
at java.base/java.util.stream.ReferencePipeline$3$1.accept(Unknown Source)
at java.base/java.util.Spliterators$ArraySpliterator.forEachRemaining(Unknown Source)
at java.base/java.util.stream.AbstractPipeline.copyInto(Unknown Source)
at java.base/java.util.stream.AbstractPipeline.wrapAndCopyInto(Unknown Source)
at java.base/java.util.stream.Nodes$CollectorTask.doLeaf(Unknown Source)
at java.base/java.util.stream.Nodes$CollectorTask.doLeaf(Unknown Source)
at java.base/java.util.stream.AbstractTask.compute(Unknown Source)
at java.base/java.util.concurrent.CountedCompleter.exec(Unknown Source)
at java.base/java.util.concurrent.ForkJoinTask.doExec(Unknown Source)
at java.base/java.util.concurrent.ForkJoinPool$WorkQueue.topLevelExec(Unknown Source)
at java.base/java.util.concurrent.ForkJoinPool.scan(Unknown Source)
at java.base/java.util.concurrent.ForkJoinPool.runWorker(Unknown Source)
at java.base/java.util.concurrent.ForkJoinWorkerThread.run(Unknown Source)
[0719/171843.659208:ERROR:elf_dynamic_array_reader.h(64)] tag not found
[0719/171843.665141:ERROR:elf_dynamic_array_reader.h(64)] tag not found
[0719/171843.666055:ERROR:elf_dynamic_array_reader.h(64)] tag not found
[0719/171843.669047:ERROR:elf_dynamic_array_reader.h(64)] tag not found
[0719/171843.669100:ERROR:elf_dynamic_array_reader.h(64)] tag not found
[0719/171843.669173:ERROR:elf_dynamic_array_reader.h(64)] tag not found
[0719/171843.669297:ERROR:elf_dynamic_array_reader.h(64)] tag not found
[0719/171843.670094:ERROR:elf_dynamic_array_reader.h(64)] tag not found
[0719/171843.670127:ERROR:elf_dynamic_array_reader.h(64)] tag not found
[0719/171843.670175:ERROR:elf_dynamic_array_reader.h(64)] tag not found
WARN ModalContext Node The node configuration changed and the table spec will be recalculated during execution.
WARN ModalContext Node The node configuration changed and the table spec will be recalculated during execution.
WARN ModalContext Node No nominal columns with possible values found. To make nominal columns usable by this node, their domain must be calculated.For columns with few values (less than 60) this is done automatically. For more values, use the Domain Calculator node or specify the possible values manually using the Edit Nominal Domain node.
WARN ModalContext Node No nominal columns with possible values found. To make nominal columns usable by this node, their domain must be calculated.For columns with few values (less than 60) this is done automatically. For more values, use the Domain Calculator node or specify the possible values manually using the Edit Nominal Domain node.
WARN ModalContext Node Normalized value is out of bounds. Original value: 19.996231153989054 Transformed value: 1.0003998819839262 Upper Bound: 1.0
WARN ModalContext Node DB Connection no longer available. Go to advanced settings to enable connection restoration.
WARN ModalContext Node Table contains missing or unsupported values - these values will be omitted.
WARN ModalContext Node DB Connection no longer available. Go to advanced settings to enable connection restoration.
WARN ModalContext Node Normalized value is out of bounds. Original value: 15.027556859806435 Transformed value: -0.0010016277374617077 Lower Bound: 0.0
WARN ModalContext Node Execute failed: Flowvariable ‘null’ not found!
