Problems installing Indigo extension in KNIME 4.7 or KNIME 5.1

gcincilla · August 17, 2023, 7:45am

Hello everyone,
When I try to install Indigo extension in KNIME AP 4.7 and 5.1 I encounter the following problems:

ERROR RepositoryManager               Node 'com.epam.indigo.knime.compjoin.IndigoComponentCombinerNodeFactory' from plugin 'com.epam.indigo.knime.plugin' could not be created. The corresponding plugin bundle could not be activated!
ERROR RepositoryManager               Node 'com.epam.indigo.knime.compsep.IndigoComponentSeparatorNodeFactory' from plugin 'com.epam.indigo.knime.plugin' could not be created. The corresponding plugin bundle could not be activated!
ERROR RepositoryManager               Node 'com.epam.indigo.knime.murcko.IndigoMurckoScaffoldNodeFactory' from plugin 'com.epam.indigo.knime.plugin' could not be created. The corresponding plugin bundle could not be activated!
ERROR RepositoryManager               Node 'com.epam.indigo.knime.rgdecomp.IndigoRGroupDecomposerNodeFactory' from plugin 'com.epam.indigo.knime.plugin' could not be created. The corresponding plugin bundle could not be activated!
ERROR RepositoryManager               Node 'com.epam.indigo.knime.scaffold.IndigoScaffoldFinderNodeFactory' from plugin 'com.epam.indigo.knime.plugin' could not be created. The corresponding plugin bundle could not be activated!
ERROR RepositoryManager               Node 'com.epam.indigo.knime.submatchcounter.IndigoSubstructureMatchCounterNodeFactory' from plugin 'com.epam.indigo.knime.plugin' could not be created. The corresponding plugin bundle could not be activated!
ERROR RepositoryManager               Node 'com.epam.indigo.knime.submatcher.IndigoSubstructureMatcherNodeFactory' from plugin 'com.epam.indigo.knime.plugin' could not be created. The corresponding plugin bundle could not be activated!
ERROR RepositoryManager               Node 'com.epam.indigo.knime.transform.IndigoMoleculeTransformNodeFactory' from plugin 'com.epam.indigo.knime.plugin' could not be created. The corresponding plugin bundle could not be activated!
ERROR RepositoryManager               Node 'com.epam.indigo.knime.isomers.IndigoIsomersEnumeratorNodeFactory' from plugin 'com.epam.indigo.knime.plugin' could not be created. The corresponding plugin bundle could not be activated!
ERROR RepositoryManager               Node 'com.epam.indigo.knime.highlighter.IndigoHighlighterNodeFactory' from plugin 'com.epam.indigo.knime.plugin' could not be created. The corresponding plugin bundle could not be activated!
ERROR RepositoryManager               Node 'com.epam.indigo.knime.weightfilter.IndigoWeightSplitterNodeFactory' from plugin 'com.epam.indigo.knime.plugin' could not be created. The corresponding plugin bundle could not be activated!
ERROR RepositoryManager               Node 'com.epam.indigo.knime.formulafilter.IndigoFormulaFilterNodeFactory' from plugin 'com.epam.indigo.knime.plugin' could not be created. The corresponding plugin bundle could not be activated!
ERROR RepositoryManager               Node 'com.epam.indigo.knime.organicfilter.IndigoOrganicSplitterNodeFactory' from plugin 'com.epam.indigo.knime.plugin' could not be created. The corresponding plugin bundle could not be activated!
ERROR RepositoryManager               Node 'com.epam.indigo.knime.rautomapper.IndigoReactionAutomapperNodeFactory' from plugin 'com.epam.indigo.knime.plugin' could not be created. The corresponding plugin bundle could not be activated!
ERROR RepositoryManager               Node 'com.epam.indigo.knime.rbuilder.IndigoReactionBuilderNodeFactory' from plugin 'com.epam.indigo.knime.plugin' could not be created. The corresponding plugin bundle could not be activated!
ERROR RepositoryManager               Node 'com.epam.indigo.knime.rsplitter.IndigoReactionSplitterNodeFactory' from plugin 'com.epam.indigo.knime.plugin' could not be created. The corresponding plugin bundle could not be activated!
ERROR RepositoryManager               Node 'com.epam.indigo.knime.arom.IndigoAromatizerNodeFactory' from plugin 'com.epam.indigo.knime.plugin' could not be created. The corresponding plugin bundle could not be activated!
ERROR RepositoryManager               Node 'com.epam.indigo.knime.dearom.IndigoDearomatizerNodeFactory' from plugin 'com.epam.indigo.knime.plugin' could not be created. The corresponding plugin bundle could not be activated!
ERROR RepositoryManager               Node 'com.epam.indigo.knime.areplacer.IndigoAtomReplacerNodeFactory' from plugin 'com.epam.indigo.knime.plugin' could not be created. The corresponding plugin bundle could not be activated!
ERROR RepositoryManager               Node 'com.epam.indigo.knime.bondreplacer.IndigoBondReplacerNodeFactory' from plugin 'com.epam.indigo.knime.plugin' could not be created. The corresponding plugin bundle could not be activated!
ERROR RepositoryManager               Node 'com.epam.indigo.knime.fremover.IndigoFeatureRemoverNodeFactory' from plugin 'com.epam.indigo.knime.plugin' could not be created. The corresponding plugin bundle could not be activated!
ERROR RepositoryManager               Node 'com.epam.indigo.knime.hadder.IndigoHydrogenAdderNodeFactory' from plugin 'com.epam.indigo.knime.plugin' could not be created. The corresponding plugin bundle could not be activated!
ERROR RepositoryManager               Node 'com.epam.indigo.knime.hremover.IndigoHydrogenRemoverNodeFactory' from plugin 'com.epam.indigo.knime.plugin' could not be created. The corresponding plugin bundle could not be activated!
ERROR RepositoryManager               Node 'com.epam.indigo.knime.layout.IndigoLayout2DNodeFactory' from plugin 'com.epam.indigo.knime.plugin' could not be created. The corresponding plugin bundle could not be activated!
ERROR RepositoryManager               Node 'com.epam.indigo.knime.standardizer.IndigoStandardizerNodeFactory' from plugin 'com.epam.indigo.knime.plugin' could not be created. The corresponding plugin bundle could not be activated!
ERROR RepositoryManager               Node 'com.epam.indigo.knime.molprop.IndigoMoleculePropertiesNodeFactory' from plugin 'com.epam.indigo.knime.plugin' could not be created. The corresponding plugin bundle could not be activated!
ERROR RepositoryManager               Node 'com.epam.indigo.knime.valence.IndigoValenceCheckerNodeFactory' from plugin 'com.epam.indigo.knime.plugin' could not be created. The corresponding plugin bundle could not be activated!
ERROR RepositoryManager               Node 'com.epam.indigo.knime.canonsmiles.IndigoCanonicalSmilesNodeFactory' from plugin 'com.epam.indigo.knime.plugin' could not be created. The corresponding plugin bundle could not be activated!
ERROR RepositoryManager               Node 'com.epam.indigo.knime.fpsim.IndigoFingerprintSimilarityNodeFactory' from plugin 'com.epam.indigo.knime.plugin' could not be created. The corresponding plugin bundle could not be activated!
ERROR RepositoryManager               Node 'com.epam.indigo.knime.molfp.IndigoMoleculeFingerprinterNodeFactory' from plugin 'com.epam.indigo.knime.plugin' could not be created. The corresponding plugin bundle could not be activated!
ERROR RepositoryManager               Node 'com.epam.indigo.knime.combchem.IndigoReactionGeneratorNodeFactory' from plugin 'com.epam.indigo.knime.plugin' could not be created. The corresponding plugin bundle could not be activated!
ERROR RepositoryManager               Node 'com.epam.indigo.knime.inchi.IndigoInchiNodeFactory' from plugin 'com.epam.indigo.knime.plugin' could not be created. The corresponding plugin bundle could not be activated!

Does anyone know how to solve the problem?
Indigo repositories can be found here and here for KNIME AP 4.7 and 5.1, respectively.
Thanks in advance for any help.
Gio

steffen_KNIME · August 17, 2023, 11:55am

Hi @gcincilla,

it is an issue known to Indigo. It does not work for MacOS.

See Update of Indigo Knime nodes · Issue #762 · epam/Indigo · GitHub
and a forum post talking about this issue: Cannot load indigo plugin

You could also raise awareness on GitHub (first link), maybe that helps them re-prioritizing it

Best regards
Steffen

gcincilla · August 18, 2023, 7:34am

Hi @steffen_KNIME, thanks for your quick reply.
It’s a pity that this extension is not working for MacOS. I’ll try to add my comment on GitHub.
Thanks

system · November 16, 2023, 7:34am

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