quantile normalization

KNIME Analytics Platform
1

How to perform quantile normalization in Knime?

Malik

2

HI Malik,

not aware there exists dedicated node for it in KNIME. R or Python are a way to go.

Br,
Ivan

3

would be a nice feature in Knime…

4

Hi @malik,

there is no native KNIME. But one can implement it with the existing nodes. Here is an example implemented in KNIME 4.0:
https://kni.me/w/Zf3gPu6WEZi9ckRt

And one of KNIME powers is that one can package solutions composed of nodes as Components and share those with others. I’ll add a ticket in the internal system to implement a dedicated component and share it on the Hub. Stay tuned :slight_smile:

Cheers,
Mischa

2 Likes
5

That’s works great for me- Thanks
I would suggest that Knime has all the Bioconductor- might the most important packages-Then it will be useful to the bioinformatics community.
@Iris
Malik

1 Like
6

I would suggest that Knime has all the Bioconductor- might the most important packages-Then it will be useful to the bioinformatics community.

7

Hi @malik,

you mean to have packages (functions) from Bioconductor as KNIME native nodes? Considering most Bioconductor components are distributed as R packages and R is integrated with KNIME isn’t it this already available?

Br,
Ivan

1 Like
8

Hi @ipazin
If you are not R guy it will be hard to deal with it- It should be more convenient for using.
I would say that like WEKA

9

HI @malik,

will check it more and get back to you.

Br,
Ivan

1 Like
10

We have released a dedicated component:

https://hub.knime.com/knime/space/Examples/00_Components/Data%20Manipulation/Quantile%20Normalization

3 Likes
11

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