Re: ImageJ Plugin Installation

Hie!

I wanted to request some help regarding execution of ImageJ macro in knime workflow.

I have a macro utilizing plugins and would like to know if there's a possibility to install them in knime?

I already tried to extract and add the pluigins as recommened in the following link: https://github.com/kmader/Quantitative-Big-Imaging-2015/wiki/KNIME-Setup#installing-fiji-plugins-imagej1-macro  but it didnt help.

Here's a link to one of the used plugins: https://sites.google.com/site/qingzongtseng/find-focus 

In some other macros; I also use 'Shen Casten Edge detector' and 'Ridge Detection' plugins developed by Biomed and BioVoxxel. 

Help will be much appreciated.

Thank you so much.

Best Regards

Hi GP,

welcome to our forum! Let's try to get you started :-) So, you have set the path to your fiji installation which contains all the plugins? What is the exact error when running them using the IJ-Macro node?

Best,

Christian