STAR aligner for RNA-seq???

[somcnmc]

Hi all,
I am looking forward to use knime platform for rna-seq data processing from fastq to feature counts, especially using the STAR aligner.

I could neither find an appropriate node for the STAR aligner nor did I find a proper workflow for rna-seq data processing.

All suggestions are welcome. It would be great to have a rna-seq pipeline with STAR.

Thanks

[sascha.wolke]

Hi @somcnmc,

Welcome to the KNIME community!

The Samcat node and other nodes in the SeqAn extension might be helpful.

Cheers