Update NodePit Plugin Error

iCFO · December 19, 2022, 7:49pm

An internal error occurred during: “Update NodePit Plugin Configuration”.
org/json/JSONException

KNIME AP Version: 4.7 / NodePit update site: https://download.nodepit.com/4.7

izaychik63 · December 19, 2022, 9:49pm

Just uninstall it and install back. I had same issue.

iCFO · January 2, 2023, 7:20pm

It happened again after running the latest update… Reinstalling now.

qqilihq · January 2, 2023, 7:51pm

Unfortunately that’s not much details to dig deeper. Can you provide more info? Log, stack trace, etc.?

Thx.

izaychik63 · January 2, 2023, 8:19pm

It seems stable issue

iCFO · January 2, 2023, 11:52pm

I think I have one install that I haven’t gotten around to fully re-installing yet. I will copy the log in the morning.

qqilihq · January 3, 2023, 11:14am

Great - that would be very helpful

iCFO · January 3, 2023, 3:41pm

2023-01-03 10:38:02,308 : WARN : ForkJoinPool.commonPool-worker-4 : : MoePreferencePage : : : Path to MOE not set in Preferences. Please check!
2023-01-03 10:38:02,594 : ERROR : ForkJoinPool.commonPool-worker-14 : : KNIPLogService : : : [ERROR] Cannot create plugin: class=‘org.scijava.plugins.scripting.javascript.JavaScriptScriptLanguage’, name=‘JavaScript’, priority=0.0, enabled=true, pluginType=ScriptLanguage
java.lang.IllegalArgumentException: No such script engine: javascript
at org.scijava.script.AdaptedScriptLanguage.findFactory(AdaptedScriptLanguage.java:152)
at org.scijava.script.AdaptedScriptLanguage.(AdaptedScriptLanguage.java:74)
at org.scijava.plugins.scripting.javascript.JavaScriptScriptLanguage.(JavaScriptScriptLanguage.java:59)
at java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance(Unknown Source)
at java.base/jdk.internal.reflect.DelegatingConstructorAccessorImpl.newInstance(Unknown Source)
at java.base/java.lang.reflect.Constructor.newInstanceWithCaller(Unknown Source)
at java.base/java.lang.reflect.ReflectAccess.newInstance(Unknown Source)
at java.base/jdk.internal.reflect.ReflectionFactory.newInstance(Unknown Source)
at java.base/java.lang.Class.newInstance(Unknown Source)
at org.scijava.plugin.PluginInfo.createInstance(PluginInfo.java:306)
at org.scijava.plugin.DefaultPluginService.createInstance(DefaultPluginService.java:237)
at org.scijava.plugin.DefaultPluginService.createInstances(DefaultPluginService.java:226)
at org.scijava.plugin.DefaultPluginService.createInstancesOfType(DefaultPluginService.java:217)
at org.scijava.plugin.AbstractSingletonService.initInstances(AbstractSingletonService.java:138)
at org.scijava.plugin.AbstractSingletonService.getInstances(AbstractSingletonService.java:77)
at org.scijava.plugin.SingletonService.lambda$initialize$0(SingletonService.java:97)
at org.scijava.object.ObjectIndex.resolvePending(ObjectIndex.java:388)
at org.scijava.object.ObjectIndex.get(ObjectIndex.java:133)
at org.scijava.object.DefaultObjectService.getObjects(DefaultObjectService.java:87)
at org.knime.knip.imagej2.core.IJGateway.isMultipleChoiceObject(IJGateway.java:352)
at org.knime.knip.imagej2.core.IJGateway.isSupportedInputType(IJGateway.java:340)
at org.knime.knip.imagej2.core.IJGateway.findSupportedModules(IJGateway.java:243)
at org.knime.knip.imagej2.core.IJGateway.(IJGateway.java:157)
at org.knime.knip.imagej2.core.IJGateway.getInstance(IJGateway.java:134)
at org.knime.knip.imagej2.core.IJGateway.getImageJVersion(IJGateway.java:169)
at org.knime.knip.imagej2.core.node.IJNodeSetFactory.(IJNodeSetFactory.java:99)
at java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance(Unknown Source)
at java.base/jdk.internal.reflect.DelegatingConstructorAccessorImpl.newInstance(Unknown Source)
at java.base/java.lang.reflect.Constructor.newInstanceWithCaller(Unknown Source)
at java.base/java.lang.reflect.Constructor.newInstance(Unknown Source)
at org.eclipse.core.internal.registry.osgi.RegistryStrategyOSGI.createExecutableExtension(RegistryStrategyOSGI.java:204)
at org.eclipse.core.internal.registry.ExtensionRegistry.createExecutableExtension(ExtensionRegistry.java:920)
at org.eclipse.core.internal.registry.ConfigurationElement.createExecutableExtension(ConfigurationElement.java:246)
at org.eclipse.core.internal.registry.ConfigurationElementHandle.createExecutableExtension(ConfigurationElementHandle.java:63)
at org.knime.core.node.extension.NodeSetFactoryExtension.from(NodeSetFactoryExtension.java:265)
at java.base/java.util.stream.ReferencePipeline$3$1.accept(Unknown Source)
at java.base/java.util.Spliterators$ArraySpliterator.forEachRemaining(Unknown Source)
at java.base/java.util.stream.ReferencePipeline$Head.forEach(Unknown Source)
at java.base/java.util.stream.ReferencePipeline$7$1.accept(Unknown Source)
at java.base/java.util.Spliterators$ArraySpliterator.forEachRemaining(Unknown Source)
at java.base/java.util.stream.AbstractPipeline.copyInto(Unknown Source)
at java.base/java.util.stream.AbstractPipeline.wrapAndCopyInto(Unknown Source)
at java.base/java.util.stream.ReduceOps$ReduceTask.doLeaf(Unknown Source)
at java.base/java.util.stream.ReduceOps$ReduceTask.doLeaf(Unknown Source)
at java.base/java.util.stream.AbstractTask.compute(Unknown Source)
at java.base/java.util.concurrent.CountedCompleter.exec(Unknown Source)
at java.base/java.util.concurrent.ForkJoinTask.doExec(Unknown Source)
at java.base/java.util.concurrent.ForkJoinPool$WorkQueue.topLevelExec(Unknown Source)
at java.base/java.util.concurrent.ForkJoinPool.scan(Unknown Source)
at java.base/java.util.concurrent.ForkJoinPool.runWorker(Unknown Source)
at java.base/java.util.concurrent.ForkJoinWorkerThread.run(Unknown Source)

2023-01-03 10:38:02,595 : ERROR : ForkJoinPool.commonPool-worker-14 : : KNIPLogService : : : [ERROR] Cannot create plugin: class=‘org.scijava.plugins.scripting.javascript.JavaScriptScriptLanguage’, name=‘JavaScript’, priority=0.0, enabled=true, pluginType=ScriptLanguage
java.lang.IllegalArgumentException: No such script engine: javascript
at org.scijava.script.AdaptedScriptLanguage.findFactory(AdaptedScriptLanguage.java:152)
at org.scijava.script.AdaptedScriptLanguage.(AdaptedScriptLanguage.java:74)
at org.scijava.plugins.scripting.javascript.JavaScriptScriptLanguage.(JavaScriptScriptLanguage.java:59)
at java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance(Unknown Source)
at java.base/jdk.internal.reflect.DelegatingConstructorAccessorImpl.newInstance(Unknown Source)
at java.base/java.lang.reflect.Constructor.newInstanceWithCaller(Unknown Source)
at java.base/java.lang.reflect.ReflectAccess.newInstance(Unknown Source)
at java.base/jdk.internal.reflect.ReflectionFactory.newInstance(Unknown Source)
at java.base/java.lang.Class.newInstance(Unknown Source)
at org.scijava.plugin.PluginInfo.createInstance(PluginInfo.java:306)
at org.scijava.plugin.DefaultPluginService.createInstance(DefaultPluginService.java:237)
at org.scijava.plugin.DefaultPluginService.createInstances(DefaultPluginService.java:226)
at org.scijava.plugin.DefaultPluginService.createInstancesOfType(DefaultPluginService.java:217)
at org.scijava.plugin.AbstractSingletonService.initInstances(AbstractSingletonService.java:138)
at org.scijava.plugin.AbstractSingletonService.getInstances(AbstractSingletonService.java:77)
at org.scijava.plugin.SingletonService.lambda$initialize$0(SingletonService.java:97)
at org.scijava.object.ObjectIndex.resolvePending(ObjectIndex.java:388)
at org.scijava.object.ObjectIndex.get(ObjectIndex.java:133)
at org.scijava.object.DefaultObjectService.getObjects(DefaultObjectService.java:87)
at org.knime.knip.imagej2.core.IJGateway.isMultipleChoiceObject(IJGateway.java:352)
at org.knime.knip.imagej2.core.IJGateway.isSupportedInputType(IJGateway.java:340)
at org.knime.knip.imagej2.core.IJGateway.findSupportedModules(IJGateway.java:243)
at org.knime.knip.imagej2.core.IJGateway.(IJGateway.java:157)
at org.knime.knip.imagej2.core.IJGateway.getInstance(IJGateway.java:134)
at org.knime.knip.imagej2.core.IJGateway.getImageJVersion(IJGateway.java:169)
at org.knime.knip.imagej2.core.node.IJNodeSetFactory.(IJNodeSetFactory.java:99)
at java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance(Unknown Source)
at java.base/jdk.internal.reflect.DelegatingConstructorAccessorImpl.newInstance(Unknown Source)
at java.base/java.lang.reflect.Constructor.newInstanceWithCaller(Unknown Source)
at java.base/java.lang.reflect.Constructor.newInstance(Unknown Source)
at org.eclipse.core.internal.registry.osgi.RegistryStrategyOSGI.createExecutableExtension(RegistryStrategyOSGI.java:204)
at org.eclipse.core.internal.registry.ExtensionRegistry.createExecutableExtension(ExtensionRegistry.java:920)
at org.eclipse.core.internal.registry.ConfigurationElement.createExecutableExtension(ConfigurationElement.java:246)
at org.eclipse.core.internal.registry.ConfigurationElementHandle.createExecutableExtension(ConfigurationElementHandle.java:63)
at org.knime.core.node.extension.NodeSetFactoryExtension.from(NodeSetFactoryExtension.java:265)
at java.base/java.util.stream.ReferencePipeline$3$1.accept(Unknown Source)
at java.base/java.util.Spliterators$ArraySpliterator.forEachRemaining(Unknown Source)
at java.base/java.util.stream.ReferencePipeline$Head.forEach(Unknown Source)
at java.base/java.util.stream.ReferencePipeline$7$1.accept(Unknown Source)
at java.base/java.util.Spliterators$ArraySpliterator.forEachRemaining(Unknown Source)
at java.base/java.util.stream.AbstractPipeline.copyInto(Unknown Source)
at java.base/java.util.stream.AbstractPipeline.wrapAndCopyInto(Unknown Source)
at java.base/java.util.stream.ReduceOps$ReduceTask.doLeaf(Unknown Source)
at java.base/java.util.stream.ReduceOps$ReduceTask.doLeaf(Unknown Source)
at java.base/java.util.stream.AbstractTask.compute(Unknown Source)
at java.base/java.util.concurrent.CountedCompleter.exec(Unknown Source)
at java.base/java.util.concurrent.ForkJoinTask.doExec(Unknown Source)
at java.base/java.util.concurrent.ForkJoinPool$WorkQueue.topLevelExec(Unknown Source)
at java.base/java.util.concurrent.ForkJoinPool.scan(Unknown Source)
at java.base/java.util.concurrent.ForkJoinPool.runWorker(Unknown Source)
at java.base/java.util.concurrent.ForkJoinWorkerThread.run(Unknown Source)

qqilihq · January 4, 2023, 7:33am

Thank you, however this stack trace is unrelated to NodePit. We have an idea though what might be causing the issue. Update will follow.

If anybody @iCFO @izaychik63 could post these details, that will additionally be helpful:

izaychik63 · January 4, 2023, 1:07pm

Here we go.

qqilihq · January 4, 2023, 7:38pm

We’ve pushed version 2.7.3 earlier today which includes a change which hopefully fixes this issue. “Hopefully”, because we were so far not able to locally reproduce the problem, thus: Please keep me posted here, if the issue is resolved for you!

Many thanks,
Philipp

iCFO · January 4, 2023, 8:00pm

Flawless on my end! Thanks again Philipp!

izaychik63 · January 4, 2023, 8:50pm

Issue gone. Thanks a lot.

qqilihq · January 4, 2023, 8:50pm

Whoop - thanks so much for the double confirmation, guys!

system · January 11, 2023, 8:51pm

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