CONSOLE:
0 …" (index 0) in row “Row0” is SDF and does not comply with its supposed superclass RDKit Molecule
WARN Principal Moment of Intertia (PMI)-Derived Properties 0:272 The selected column (Molecule (with coord.)) is not present in the incoming table
ERROR Principal Moment of Intertia (PMI)-Derived Properties 0:272 Execute failed: (“NullPointerException”): null
KNIME.log:
java.lang.NullPointerException
at com.vernalis.knime.chem.util.points.AbstractPoint.getCentreOfGravity(AbstractPoint.java:287)
at com.vernalis.knime.chem.pmi.props.PMI.fromPoints(PMI.java:67)
at com.vernalis.knime.chem.pmi.nodes.props.pmiderived.PmiDerivedPropsNodeFactory$1.getObjFromPointList(PmiDerivedPropsNodeFactory.java:58)
at com.vernalis.knime.chem.pmi.nodes.props.pmiderived.PmiDerivedPropsNodeFactory$1.getObjFromPointList(PmiDerivedPropsNodeFactory.java:1)
at com.vernalis.knime.core.nodes.props.abstrct.AbstractPointListMoleculePropertyCalcNodeModel.getMolContainerFromCell(AbstractPointListMoleculePropertyCalcNodeModel.java:128)
at com.vernalis.knime.core.nodes.props.abstrct.AbstractMoleculePropertyCalcNodeModel.getContainerObjFromCell(AbstractMoleculePropertyCalcNodeModel.java:175)
at com.vernalis.knime.nodes.propcalc.AbstractPropertyCalcNodeModel$1.getCells(AbstractPropertyCalcNodeModel.java:222)
at org.knime.core.data.container.RearrangeColumnsTable.calcNewCellsForRow(RearrangeColumnsTable.java:541)
at org.knime.core.data.container.RearrangeColumnsTable.calcNewColsSynchronously(RearrangeColumnsTable.java:462)
at org.knime.core.data.container.RearrangeColumnsTable.create(RearrangeColumnsTable.java:380)
at org.knime.core.node.ExecutionContext.createColumnRearrangeTable(ExecutionContext.java:385)
at org.knime.core.node.streamable.simple.SimpleStreamableFunctionNodeModel.execute(SimpleStreamableFunctionNodeModel.java:117)
at org.knime.core.node.NodeModel.execute(NodeModel.java:737)
at org.knime.core.node.NodeModel.executeModel(NodeModel.java:571)
at org.knime.core.node.Node.invokeFullyNodeModelExecute(Node.java:1236)
at org.knime.core.node.Node.execute(Node.java:1016)
at org.knime.core.node.workflow.NativeNodeContainer.performExecuteNode(NativeNodeContainer.java:557)
at org.knime.core.node.exec.LocalNodeExecutionJob.mainExecute(LocalNodeExecutionJob.java:95)
at org.knime.core.node.workflow.NodeExecutionJob.internalRun(NodeExecutionJob.java:218)
at org.knime.core.node.workflow.NodeExecutionJob.run(NodeExecutionJob.java:124)
at org.knime.core.util.ThreadUtils$RunnableWithContextImpl.runWithContext(ThreadUtils.java:334)
at org.knime.core.util.ThreadUtils$RunnableWithContext.run(ThreadUtils.java:210)
at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511)
at java.util.concurrent.FutureTask.run(FutureTask.java:266)
at org.knime.core.util.ThreadPool$MyFuture.run(ThreadPool.java:123)
at org.knime.core.util.ThreadPool$Worker.run(ThreadPool.java:246)
2020-07-06 11:25:22,281 : DEBUG : KNIME-Worker-272-Principal Moment of Intertia (PMI)-Derived Properties 0:272 : : WorkflowManager : Principal Moment of Intertia (PMI)-Derived Properties : 0:272 : Principal Moment of Intertia (PMI)-Derived Properties 0:272 doBeforePostExecution
2020-07-06 11:25:22,282 : DEBUG : KNIME-Worker-272-Principal Moment of Intertia (PMI)-Derived Properties 0:272 : : NodeContainer : Principal Moment of Intertia (PMI)-Derived Properties : 0:272 : Principal Moment of Intertia (PMI)-Derived Properties 0:272 has new state: POSTEXECUTE
2020-07-06 11:25:22,282 : DEBUG : KNIME-Worker-272-Principal Moment of Intertia (PMI)-Derived Properties 0:272 : : WorkflowManager : Principal Moment of Intertia (PMI)-Derived Properties : 0:272 : Principal Moment of Intertia (PMI)-Derived Properties 0:272 doAfterExecute - failure
2020-07-06 11:25:22,282 : DEBUG : KNIME-Worker-272-Principal Moment of Intertia (PMI)-Derived Properties 0:272 : : Node : Principal Moment of Intertia (PMI)-Derived Properties : 0:272 : reset
2020-07-06 11:25:22,282 : DEBUG : KNIME-Worker-272-Principal Moment of Intertia (PMI)-Derived Properties 0:272 : : Node : Principal Moment of Intertia (PMI)-Derived Properties : 0:272 : clean output ports.
2020-07-06 11:25:22,282 : DEBUG : KNIME-Worker-272-Principal Moment of Intertia (PMI)-Derived Properties 0:272 : : WorkflowDataRepository : Principal Moment of Intertia (PMI)-Derived Properties : 0:272 : Removing handler 70357fb6-bd5d-4778-9759-7af79713ce4f (Principal Moment of Intertia (PMI)-Derived Properties 0:272: ) - 153 remaining
2020-07-06 11:25:22,282 : DEBUG : KNIME-Worker-272-Principal Moment of Intertia (PMI)-Derived Properties 0:272 : : NodeContainer : Principal Moment of Intertia (PMI)-Derived Properties : 0:272 : Principal Moment of Intertia (PMI)-Derived Properties 0:272 has new state: IDLE
2020-07-06 11:25:22,282 : DEBUG : KNIME-Worker-272-Principal Moment of Intertia (PMI)-Derived Properties 0:272 : : Node : Principal Moment of Intertia (PMI)-Derived Properties : 0:272 : Configure succeeded. (Principal Moment of Intertia (PMI)-Derived Properties)
2020-07-06 11:25:22,282 : DEBUG : KNIME-Worker-272-Principal Moment of Intertia (PMI)-Derived Properties 0:272 : : NodeContainer : Principal Moment of Intertia (PMI)-Derived Properties : 0:272 : Principal Moment of Intertia (PMI)-Derived Properties 0:272 has new state: CONFIGURED