Waehlby Cell Clump Splitter is too ambitious

KNIME Extensions Image Processing
#1

Good morning,

I want to use the Waehlby Cell Clump Splitter node but it always splits nuclei which should not be split. It doen’t matter what settings I use! For every correct split, there is one incorrect split. How can I fix this?

There is one example attached.

Cheers,
Marc

Waehlby.knwf (2.6 MB)

#2

Hi @ImNotGoodSry,
the most important parameter in your case was the the Gaussian size parameter, changing it allowed me to get quite good results, see the attached workflow: Waehlby-improved parameters.knwf (2.6 MB)
best,
Gabriel

1 Like
#3

@gab1one This is amazing,I didn’t try such big numbers. Thanks alot!

#4

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