I used a javasnippet node with a an Rdkit script.
One of the users here @josemanuel managed to make it work with Linux version (4.02) but in my version on windows 10 it is not working. Once the snippet is executing, Knime crashes and closes before I can read any error.
The snippet worked for me normally with other PDB file but crashes with the one attached here.
My analysis of the problem: it worked with other pdb then the script itself and RDkit should be alright.
The pdb did not work for me but worked for a linux user, so I guess it is a problem in the windows version.
I attach the workflow and the pdb causing the problem.
Thanks,rdkit_from_pdb_2.zip (68.8 KB)